Protein_search_fetch_align_tree
(2)
An implmentation of the classical sequence analysis workflow:
Find homologues (sequence similarity search)
Fetch homologues
Align homologues (multiple sequence alignment)
Produce phylogenetic tree
In this implementation the EBI webservices are used:
WU-BLAST (WSWUBlast) blastp vs. UniProtKB
dbfetch (WSDbfetch)
ClustalW (WSClustalW2)
ClustalW (WSClustalW2)
Note: this version does not add the inital query sequence to the alignment, and so is most useful when used with the identifers...
Created: 2009-04-07
Credits:
Hamish McWilliam
Attributions:
EBI_ClustalW2
EBI_ClustalW2_phylogentic_tree
EBI_dbfetch_fetchBatch
EBI_WU-BLAST
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