Find protein identifications in PRIDE
Created: 2012-02-21 23:09:14
Last updated: 2012-02-22 21:00:14
Find protein Identifications in PRIDE by protein accession
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Workflow Components
![header=[] body=[This is the author information extracted from the workflow version] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200] Information](/images/famfamfam_silk/information.png?1680607579)
Authors (1)
![header=[] body=[These are the descriptive titles embedded within the workflow version] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200] Information](/images/famfamfam_silk/information.png?1680607579)
Titles (1)
Find protein Identifications in PRIDE by protein accession |
![header=[] body=[These are the descriptions embedded within the workflow version] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200] Information](/images/famfamfam_silk/information.png?1680607579)
Descriptions (1)
Find protein Identifications in PRIDE by protein accession |
![header=[] body=[These are the listed dependencies of the workflow] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200] Information](/images/famfamfam_silk/information.png?1680607579)
Dependencies (0)
Inputs (1)
Name |
Description |
ProteinAccession |
Any protein accession (UniProt, IPI, Ensembl, ...)
|
Processors (2)
Name |
Type |
Description |
pride |
biomart |
|
createTsvSummary |
beanshell |
ScriptString lineSeparator = System.getProperty ( "line.separator" );
String tab = "\t";
String summary = "";
summary += "ExperimentAccession" + tab;
summary += "ExperimentTitle" + tab;
summary += "Celltype" + tab;
summary += "ModificationLocatio" + tab;
summary += "PeptideSequence" + tab;
summary += "PsiModificationName" + tab;
summary += "SpecieName" + tab;
summary += "SpectrumLink" + tab;
summary += "SubmittedProteinAccession" + tab;
summary += "TissueName" + tab;
summary += lineSeparator;
for (int i = 0; i < ExperimentAccession.size(); i++) {
summary += ExperimentAccession.get(i) + tab;
summary += ExperimentTitle.get(i) + tab;
summary += Celltype.get(i) + tab;
summary += ModificationLocation.get(i) + tab;
summary += PeptideSequence.get(i) + tab;
summary += PsiModificationName.get(i) + tab;
summary += SpecieName.get(i) + tab;
summary += SpectrumLink.get(i) + tab;
summary += SubmittedProteinAccession.get(i) + tab;
summary += TissueName.get(i) + tab;
summary += lineSeparator;
}
|
Beanshells (1)
Name |
Description |
Inputs |
Outputs |
createTsvSummary |
|
PsiModificationName
SpectrumLink
TissueName
ExperimentTitle
SpecieName
ModificationLocation
Celltype
SubmittedProteinAccession
PeptideSequence
ExperimentAccession
|
summary
|
Datalinks (12)
Source |
Sink |
ProteinAccession |
pride:pride.xref_accession_filter_filter |
pride:pride.psi_mod_term |
createTsvSummary:PsiModificationName |
pride:pride.brenda |
createTsvSummary:TissueName |
pride:pride.celltype |
createTsvSummary:Celltype |
pride:pride.experiment_ac |
createTsvSummary:ExperimentAccession |
pride:pride.experiment_title |
createTsvSummary:ExperimentTitle |
pride:pride.mod_location |
createTsvSummary:ModificationLocation |
pride:pride.newt_name |
createTsvSummary:SpecieName |
pride:pride.peptide_sequence |
createTsvSummary:PeptideSequence |
pride:pride.peptide_spectrum_ref |
createTsvSummary:SpectrumLink |
pride:pride.submitted_accession |
createTsvSummary:SubmittedProteinAccession |
createTsvSummary:summary |
SUMMARY |
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licensed under:
Version 1 (earliest)
(of 2)
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