Chemical term extractor - text2structure

Created: 2013-04-22 07:39:33      Last updated: 2013-04-22 07:42:25

This workflow demonstrates how to extract biological and chemical terms (text!) from a PDF file using the KNIME text processing nodes and attempts to convert the chemistry terms to structures.

Requirements:
KNIME 2.7.4
KNIME Labs nodes - Text Processing
Community Nodes - RDKit (to view structures)

See http://tech.knime.org/community

Start by selecting the folder containing the PDF documents. Alternatively, you can use a folder with Word docs.

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