Chemical term extractor - text2structure

Created: 2013-04-22 07:39:33      Last updated: 2013-04-22 07:42:25

This workflow demonstrates how to extract biological and chemical terms (text!) from a PDF file using the KNIME text processing nodes and attempts to convert the chemistry terms to structures.

KNIME 2.7.4
KNIME Labs nodes - Text Processing
Community Nodes - RDKit (to view structures)


Start by selecting the folder containing the PDF documents. Alternatively, you can use a folder with Word docs.

Information Preview


Information Run

Not available

Information Workflow Components

Not available

Information Workflow Type


Information Uploader

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (1)


Information Attributions (1)


Information Tags (5)

Log in to add Tags

Information Shared with Groups (1)

Information Featured In Packs (0)


Log in to add to one of your Packs

Information Attributed By (1)


Information Favourited By (0)

No one

Information Statistics


Citations (0)


Version History

In chronological order:

Reviews Reviews (0)

No reviews yet

Be the first to review!

Comments Comments (0)

No comments yet

Log in to make a comment

Workflow Other workflows that use similar services (0)

There are no workflows in myExperiment that use similar services to this Workflow.