genscan_shim_example2.xml

Created: 2008-07-30 15:05:38 Last updated: 2008-07-30 15:12:19

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Workflow Components

Inputs (1)

Name	Description
dna

Processors (6)

Name	Type	Description
searchSimple	arbitrarywsdl
database	stringconstant
program	stringconstant
genscansplitter	soaplabwsdl	Runs genscan on the input sequence
genscan	soaplabwsdl	Runs genscan on the input sequence
patmatmotifs	soaplabwsdl	Search a PROSITE motif database with a protein sequence

Beanshells (0)

Outputs (5)

Name	Description
peptides
cds
blast_out
Prosite_matches
genscan_report

Links (11)

Source	Sink
dna	genscan:sequence_direct_data
database:value	searchSimple:database
genscan:output	genscansplitter:scanrecord_direct_data
genscansplitter:coding	cds
genscansplitter:coding	genscan_report
genscansplitter:peptide	patmatmotifs:sequence_direct_data
genscansplitter:peptide	peptides
genscansplitter:peptide	searchSimple:query
patmatmotifs:outfile	Prosite_matches
program:value	searchSimple:program
searchSimple:Result	blast_out

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Taverna 1

Information Uploader

Thomas Burkard

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Katy Wolstencroft

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EraSysBio_Tutorial

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1971 viewings

1868 downloads

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genscan_shim_example2.xml

Created by Thomas Burkard on Wednesday 30 July 2008 15:05:38 (UTC)

Last edited by Thomas Burkard on Wednesday 30 July 2008 15:12:19 (UTC)