plotGenomic

Created: 2013-10-07 15:02:26

This workflow returns a graphical representation of selected Nencki Genomics Database (www.nencki-genomics.org) content in the ± 10 kb flank of the transcription start site of a chosen gene.

More precisely, it returns instances of selected area types, and instances of selected motif types that intersect any of the returned area instances. The results are returned as three files: a pdf file with the plot, and two tab-separated files with the details of areas and motifs shown in the plot.

Publication doi: 10.1093/database/bat069

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Citations (1)

1. Izabella Krystkowiak; Jakub Lenart; Konrad Debski; Piotr Kuterba; Michal Petas; Bozena Kaminska; Michal Dabrowski, Nencki Genomics Database--Ensembl funcgen enhanced with intersections, user data and genome-wide TFBS motifs, Database 2013; doi: 10.1093/database/bat069, 02 October 2013, http://database.oxfordjournals.org/cgi/content/full/bat069? ijkey=ml5GxAmJmA0S7wS&keytype=ref


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Workflow showDatasetsGenomic (1)

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Shows all the datasets available in the Nencki Genomics Database (www.nencki-genomics.org). Click 'Use examples' to see all the datasets, separated into datasets of TFBS motifs, and all the remaining datasets (areas), the latter including data from Ensembl funcgen and (thus) Encode. Publication doi: 10.1093/database/bat069

Created: 2013-10-07

Credits: User mdabr