Tutorial 1 Workflow

Created: 2014-04-16 14:55:56      Last updated: 2014-04-16 15:07:17

Fetch and combine transcriptomics and proteomics data from NSC11 cells in GEO and PRIDE respectively. Apply spectral counting on the proteomics data.

The workflow demonstrates how to combine data from different domains (here microarray- based transcriptomics and mass spectrometry-based proteomics) and do something useful with the data. The workflow also demonstrates spreadsheet import and XPath parsing of XML data.

This workflow is for tutorial/educational use only. The cells were not grown under the same conditions, nor should raw spectral counts be used for protein quantitation.

Information Preview

Information Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
[ More InfoExpand ]

Information Workflow Components

Information Authors (1)
Information Titles (1)
Information Descriptions (1)
Information Dependencies (0)
Inputs (1)
Processors (11)
Beanshells (3)
Outputs (3)
Datalinks (14)
Coordinations (0)

Information Workflow Type

Taverna 2

Information Uploader

Information License

All versions of this Workflow are licensed under:

Information Version 2 (latest) (of 2)

View version:

Information Credits (1)


Information Attributions (0)



Information Tags (0)


Log in to add Tags

Information Shared with Groups (1)

Information Featured In Packs (0)


Log in to add to one of your Packs

Information Attributed By (1)


Information Favourited By (0)

No one

Information Statistics


Citations (0)


Version History

In chronological order:

Reviews Reviews (0)

No reviews yet

Be the first to review!

Comments Comments (0)

No comments yet

Log in to make a comment

Workflow Other workflows that use similar services (0)

There are no workflows in myExperiment that use similar services to this Workflow.