Q10:For a given compound, summarize all similar compounds and their activities.

Created: 2014-10-22 09:27:56

In the Open PHACTS project, we have developed KNIME utility nodes that can be set to automatically leverage the desired content from Open PHACTS web services and simplify the construction of workflow processes.  In this workflow we use the these KNIME nodes (which can be down loaded here: https://github.com/openphacts/OPS-Knime ) with the Open PHACTS API call Chemical Structure Search: Similarity with filters searchOptions.SimilarityType=0 and searchOptions.Threshold=0.80, followe by Compound Pharmacology with filter activity_type=IC50|EC50|AC50|Ki|Kd|Potency to answer scientific competency question Q10: For a given compound, summarize all similar compounds and their activities.

Information Preview

Medium

Information Run

Not available


Information Workflow Components

Not available

Information Workflow Type

KNIME

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (3)

(People/Groups)

Information Attributions (0)

(Workflows/Files)

None

Information Tags (2)

Log in to add Tags

Information Shared with Groups (1)

Information Featured In Packs (1)

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

 

Citations (0)

None


Version History

In chronological order:



Reviews Reviews (0)

No reviews yet

Be the first to review!



Comments Comments (0)

No comments yet

Log in to make a comment




Workflow Other workflows that use similar services (0)

There are no workflows in myExperiment that use similar services to this Workflow.