Variant Annotation with VEP (Variant Effect Predictor) from GATK .gvcf files

Created: 2017-10-19 09:41:42

Here, from a list of g.vcf files, we execute GenotypeGVCFs command line GenotypeGVCFs perform joint genotyping on gVCF files produced by HaplotypeCaller

Variant Effect Predictor

The VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

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