Retrieve SNPs from regions around known genes

Created: 2007-11-07 15:50:40

Given a list of Gene IDs this workflow will query against the Ensembl human genome data to fetch the genomic region for each gene, extend that region by 1000bp in each direction and use this set of ranges, one per gene, to build a query against dbSNP to return the SNP identifier and location information (chromosome name, strand and position)

Information Preview

Information Run

Run this Workflow in the Taverna Workbench...

Option 1:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/70/download?version=1
[ More InfoExpand ]


Information Workflow Components

Inputs (1)
Processors (6)
Beanshells (3)
Outputs (2)
Links (13)
Coordinations (0)

Information Workflow Type

Taverna 1

Information Uploader

Information License

All versions of this Workflow are licensed under:

Information Version 1 (of 1)

Information Credits (0)

(People/Groups)

None

Information Attributions (0)

(Workflows/Files)

None

Information Tags (3)

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

 

Citations (0)

None


Version History

In chronological order:



Reviews Reviews (0)

No reviews yet

Be the first to review!



Comments Comments (1)

Log in to make a comment

  • Thursday 21 May 2009 17:04:08 (UTC)

    This workflow uses an out-of-date version of the Biomart data and may throw an error such as:

    DatasetConfig objects must be provided a DSConfigAdaptor to facilitate lazyLoading




Workflow Other workflows that use similar services (0)

There are no workflows in myExperiment that use similar services to this Workflow.