Retrieve SNPs from regions around known genes

Created: 2007-11-07 15:50:40

Given a list of Gene IDs this workflow will query against the Ensembl human genome data to fetch the genomic region for each gene, extend that region by 1000bp in each direction and use this set of ranges, one per gene, to build a query against dbSNP to return the SNP identifier and location information (chromosome name, strand and position)

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  • Thursday 21 May 2009 17:04:08 (UTC)

    This workflow uses an out-of-date version of the Biomart data and may throw an error such as:

    DatasetConfig objects must be provided a DSConfigAdaptor to facilitate lazyLoading

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