This workflow uses one or more services that are deprecated as of 31st December 2012 (about 6 years ago), and may no longer function. Show details...

MassBank to KEGG

Created: 2009-03-30 09:30:32      Last updated: 2009-03-30 09:49:13

Workflow that queries MassBank DB to retrieve database identifiers (KEGG, PubChem, InChI) and continue search with them to retrieve pathways from KEGG for given compound identifier,searches PubChem via eutils and PUG, queries ChemSpider for compound information and image.

Note: Usage of ChemSpider web services requires a valid security token - receive one by registering at ChemSpider (look at your profile to see your token)

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Taverna 1

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Workflow takes in a text file of microRNAs from microCOSM (at the EBI) and outputs a list of KEGG pathway information, including genes in pathways and pathway abstracts from PubMed. The results can then be used in various text mining applications/workflows to rank the results against a given disease.Workflow takes in a file of microRNAs

Created: 2010-03-17

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Attributions: Workflow Pathways and Gene annotations for QTL region