BioAID_ProteinToDiseases

Created: 2007-11-14 12:47:57      Last updated: 2007-11-15 09:00:44

This workflow was based on BioAID_DiseaseDiscovery, changes: expects only one protein name, adds protein synonyms).

This workflow finds diseases relevant to the query string via the following steps:

  1. A user query: a single protein name
  2. Add synonyms (service courtesy of Martijn Scheumie, Erasmus University Rotterdam)
  3. Retrieve documents: finds relevant documents (abstract+title) based on query
  4. Discover proteins: extract proteins discovered in the set of relevant abstracts

  1. Link proteins to disease contained in the OMIM disease database.

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Only the first 2 workflows that use similar services are shown. View all workflows that use these services.


Workflow BioAID_DiseaseDiscovery_RatHumanMouseUnipr... (4)

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This workflow finds disease relevant to the query string via the following steps: 1. A user query: a list of terms or boolean query - look at the Apache Lucene project for all details. E.g.: (EZH2 OR "Enhancer of Zeste" +(mutation chromatin) -clinical); consider adding 'ProteinSynonymsToQuery' in front of the input if your query is a protein. 2. Retrieve documents: finds 'maximumNumberOfHits' relevant documents (abstract+title) based on query (the AIDA service inside is based on Apa...

Created: 2008-12-15 | Last updated: 2011-08-11

Credits: User Marco Roos Network-member AID

Workflow BioAID_ProteinDiscovery_filterOnHumanUnipr... (11)

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This workflow finds proteins relevant to the query string via the following steps: A user query: a single gene/protein name. E.g.: (EZH2 OR "Enhancer of Zeste"). Retrieve documents: finds 'maximumNumberOfHits' relevant documents (abstract+title) based on query (the AIDA service inside is based on Apache's Lucene) Discover proteins: extract proteins discovered in the set of relevant abstracts with a 'named entity recognizer' trained on genomic terms using a Bayesian approach; the AIDA serv...

Created: 2009-05-28

Credits: User Marco Roos User Martijn Schuemie Network-member AID Network-member AID_myGrid_collaboration

Attributions: Workflow BioAID_DiseaseDiscovery_RatHumanMouseUniprotFilter