Tuiuiu synchronous workflow

Created: 2009-06-29 09:42:08      Last updated: 2009-06-29 09:59:57

Tuiuiu removes from a sequence or from a set of sequences areas as large as possible that do not contain researched repeats.

Tuiuiu is used as a preliminary step before applying a multiple local aligner tool.



Modeling and algorithmic details are provided in the following paper.
Please, cite this paper if you use Tuiuiu.

P. Peterlongo, G. Sacomoto, A. Pereira do Lago, N. Pisanti, M.-F. Sagot
Lossless filter for multiple repeats with bounded edit distance
BMC Algorithms for Molecular Biology 2009, 4:3 doi:10.1186/1748-7188-4-3

Link: http://www.almob.org/content/4/1/3

 

This web service is made available on GenOuest bioinformatics platform (Rennes, France) using Opal toolkit. A list of other web-services available on GenOuest platform can be viewed here.

This workflow uses Tuiuiu in a synchronous way: the workflow will launch Tuiuiu and wait the end of the job before continuing.

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Workflow Other workflows that use similar services (1)

Workflow Tuiuiu asynchronous workflow (1)

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Tuiuiu removes from a sequence or from a set of sequences areas as large as possible that do not contain researched repeats. Tuiuiu is used as a preliminary step before applying a multiple local aligner tool. Modeling and algorithmic details are provided in the following paper. Please, cite this paper if you use Tuiuiu. P. Peterlongo, G. Sacomoto, A. Pereira do Lago, N. Pisanti, M.-F. Sagot Lossless filter for multiple repeats with bounded edit distance BMC Algorithms for Mole...

Created: 2009-06-29 | Last updated: 2009-06-29

Credits: User http://osallou.myopenid.com/ Network-member GenOUEST Platform