Workflows

get_element_relations_by_pathway (1)

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Retrieve all objects and relations on specified pathway Input example: path:bsu00010

Created: 2008-10-08

Credits: Franck Tanoh

Cove_NetCDF_visualization (1)

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The Cove workflow reads oceanographic NetCDF data, does a simple processing step, writes the data out, then sends a web service message to the COVE visualization tool. It is a four step, sequential workflow.

Created: 2008-10-08 | Last updated: 2008-10-08

Credits: Trident

get_drugs_by_pathways (1)

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Retrieves all drugs on the specified pathway. input example: path:map07025 ; path:eco00020

Created: 2008-10-07

Credits: Franck Tanoh

color_pathway_by_elements (2)

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Color the objects (rectangles and circles on a pathway map) corresponding to the given 'element_id_list' with the specified colors and return the URL of the colored image. Example of inputs: pathway_id: path:bsu00010 element_list: (to add as list) 78 79 fg_color_list:(to add as list) red blue bg_color_list: (to add as list) green yellow

Created: 2008-09-30 | Last updated: 2008-10-01

Credits: Franck Tanoh

Extract elements from a list - single elem... (1)

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The extract_elements_from_a_list is passed the list ['a','b','c','d','e']. The fromIndex is 2 and the toIndex is 3, so the service outputs the single element list ['c'].

Created: 2008-09-29

Credits: Alan Williams

Extract elements from a list - full extrac... (1)

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The extract_elements_from_a_list is passed the list ['a','b','c','d','e']. The fromIndex is 0 and the toIndex is 5, so the service outputs an identical list.

Created: 2008-09-29

Credits: Alan Williams

Test always fails - no parameters (1)

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The test always fails service generates a service failure when no parameter values are supplied.

Created: 2008-09-27

Credits: Alan Williams

Reverse complement DNA (1)

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The Reverse Complement DNA service takes the DNA sequence, here defaulted to 'gatcctccat' and outputs the corresponding reverse complement sequence, in this example, 'atggaggatc'.

Created: 2008-09-27

Credits: Alan Williams

Read GenBank file (1)

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The Get_web_page_from_URL downloads a file from myExperiment that contains GenBank data. That data is then saved to a temporary file generated by the create_and_populate_temporary_file beanshell. The path to the temporary file is then passed to the Read_GenBank_file service. That service reads the file and converts the GenBank data into Agave format. The result is then sent to the workflow's out port.

Created: 2008-09-27

Credits: Alan Williams

Fail if false - false value (1)

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The fail if true service throws an exception if given the value 'false'.

Created: 2008-09-27

Credits: Alan Williams