Workflows

Image QA (RAW/NonRAW, Ssim, Equals) (1)

• Download

Reads images either by reading the file directly or using dcraw depending on the image mimetype. Then runs QA algorithms to compare the images.

Created: 2012-02-27 | Last updated: 2012-02-27

Credits: Markus Plangg

Image QA - Read image (RAW/NonRAW) (1)

• Download

Reads an image for evaluation. How the file is read depends on the image type (RAW, NonRAW) of the current image and the image to compare with.

Created: 2012-02-27 | Last updated: 2012-02-27

Credits: Markus Plangg

Propagation of CME from the Sun (1)

• Download

Uses the processing service to calculate the objects (planets and observatories) which a CME might hit. Required longitude input is the longitude of the associated flare event.

Created: 2012-02-27 | Last updated: 2012-02-27

Credits: Anja Le Blanc

VAMDC VALD query with SME processing (2)

• Download

VAMDC workflow that queries the VALD Atomic database in Moscow and runs SME (Spectroscopy Made Easy) VAMDC Taverna Plugin: http://voparis-twiki.obspm.fr/twiki/bin/view/VAMDC/TavernaUserGuide

Created: 2012-02-24 | Last updated: 2012-09-12

CME backwards propagation (1)

• Download

Workflow propagates an CME event from its observing point (planet/spacecraft) back to the sun. The propagation also provides the timing of this event at other points in space (planet/spacecraft)

Created: 2012-02-23 | Last updated: 2012-02-23

Credits: Anja Le Blanc

Propagation of the Solar Energetic Particl... (1)

• Download

use of the processing service to calculate time delays to the planets Inputs: time when propagation should start from the hit object hit_object where was the SEP event observed speed of the solar wind error value of solar wind speed beta traveling speed of energetic particals as percentage of the speed of light

Created: 2012-02-22 | Last updated: 2012-02-22

Credits: Anja Le Blanc

Find protein identifications in PRIDE (2)

• Download

Find protein identifications information in the PRIDE database using a protein accession as input.

Created: 2012-02-21 | Last updated: 2012-02-22

Credits: Rafael C. Jimenez

RAWverna Image Evaluator - Evaluate relative (1)

• Download

Takes two images as byte array and compares them using the RAWverna Image Evaluator.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

RAWverna Image Evaluator - Evaluate Equals (1)

• Download

Takes two images as byte array and compares them for equality using the RAWverna Image Evaluator.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

RAWverna image evaluation - Read images (RAW) (1)

• Download

Reads RAW images for evaluation by RAWverna.

Created: 2012-02-21

Credits: Markus Plangg

RAWverna Image evaluation - Read Image (RAW) (1)

• Download

Reads an image from the given path using dcraw for image comparison.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

RAWverna Image evaluation - Read images (R... (1)

• Download

Reads images for evaluation by RAWverna. The read parameters depend on the type of the images.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

Get image mimetype (1)

• Download

Returns the mimetype of an image.

Created: 2012-02-21 | Last updated: 2012-02-21

Credits: Markus Plangg

Convert by target path (1)

• Download

Converts a file to a target format depending on the target path extension.

Created: 2012-02-21 | Last updated: 2012-08-14

Credits: Markus Plangg

Get a list of Protein Identification exper... (3)

• Download

Get a list of Protein Identification experiments from PRIDE by a Gene Ontology query

Created: 2012-02-21 | Last updated: 2013-07-10

Credits: Rafael C. Jimenez

Parse QuickGO "proteinList" file format (2)

• Download

Parse QuickGO "proteinList" file format. http://www.ebi.ac.uk/QuickGO/reference.html

Created: 2012-02-20 | Last updated: 2013-07-10

Credits: Rafael C. Jimenez

WCP-04 Exclusive choice - if/else branching (1)

• Download

The choice of executing choiceA or choiceB is determined by using String_List_Intersection and String_List_Difference. If in="true" then the intersection will yield a non-empty list, triggering execution of choiceA. This list will however not differ from the input, and so choiceB will iterate over an empty list (ie. not execute). Note how using 'difference' for the else-case here means that if you run the workflow with in="bob", choiceB would still run. Some early if/el...

Created: 2012-02-20 | Last updated: 2012-02-20

Credits: Stian Soiland-Reyes

Attributions: Example of a conditional execution workflow Example of conditional invocation

Get a list of proteins from a Gene Ontolog... (1)

• Download

Get a list of UniProt proteins that have been annotated with the same Gene Ontology (GO) term. This workflow uses the the QuickGO service

Created: 2012-02-20 | Last updated: 2012-02-22

Credits: Rafael C. Jimenez

Run a Workflow on Taverna Server (local t2... (1)

Uses a local t2flow file to submit and run this workflow on the taverna server. You need a user name and password to execute this workflow. Input to the workflow which runs remotely will be requested interactively.

Created: 2012-02-20

Credits: Anja Le Blanc

Attributions: Run a Workflow on Taverna Server

Run a Workflow on Taverna Server (1)

Uses the URL to a t2flow file to submit and run this workflow on the taverna server. You need a user name and password to execute this workflow. Input to the workflow which runs remotely will be requested interactively.

Created: 2012-02-17 | Last updated: 2012-02-17

Credits: Anja Le Blanc

Simulation workflow for flooding emergency... (1)

Simulation workflow for flooding emergency simulation. This workflow cannot be executed as is due to authentification restriction, and local tools dependancies.

Created: 2012-02-15

document clustering (1)

• Download

Tesla Experiment Clustering wikipedia articles of different topics Evaluation of the results with the purity measure and rand index

Created: 2012-02-15 | Last updated: 2012-02-17

Credits: AGeduldig

Radio lists search over time period (2)

• Download

This workflow searches the wind stereo II IV radioburst list, wind tyhpe II soho cme list, hfc radioburst type III list, tsrs solar radio event list and combines the return of these lists chronologically. Only time_start, time_end, and comment sections are preserved in the result list.

Created: 2012-02-13 | Last updated: 2012-02-14

Credits: Anja Le Blanc

Render gene via BioGPS (2)

• Download

This workflow uses the REST API of BioGPS to list the plugins and then allow the user to select which plugin to use to display the input gene id

Created: 2012-02-10 | Last updated: 2012-02-15

Credits: Alan Williams

Parameter optimization (1)

• Download

This is a parameter optimization workflow for rating prediction recommendation operators.

Created: 2012-02-10 | Last updated: 2012-02-10

Credits: Matej Mihelčić

Associated Region to Gene List (1)

• Download

Produces a gene list from the Associated Region XML file

Created: 2012-02-08 | Last updated: 2012-02-08

Credits: Paul martin

Make XML Parameters (1)

• Download

Reformats a SNP list with optional p-value into the required XML input for the 'Define Associated Regions and Genes' workflow. Additional parameters can be supplied to add to the XML document.

Created: 2012-02-08 | Last updated: 2012-02-08

Credits: Paul martin

Define Associated Regions and Genes (2)

• Download

Defines regions and genes from associated SNPs A JAVA MySQL connector is required to run the workflow and must be placed in the $TAVERNA_HOME/lib directory.

Created: 2012-02-08 | Last updated: 2012-05-09

Credits: Paul martin

A heuristic measure for detecting undesire... (2)

• Download

The workflow takes TIFF image instances as input, applies a list of JP2 compression parameter values, executes OCR using an open source OCR engine, evaluates the results, and creates a diagram visualising the results. Dependencies on external tools for the tool service components: Tesseract ImageMagick Kakadu Gnuplot Dependencies on external Java libraries of beanshells: Apache commons lang

Created: 2012-02-06 | Last updated: 2012-03-09

Credits: Sven

Experimentation through repository access (1)

• Download

This workflow reads train/test dataset from a specified RapidMiner repository and tests selected operator on that datasets. Only datasets specified with a proper regular expression are considered. Train and test data filenames must correspond e.g (train1, test1). Informations about training and testing data, performanse measures of a selected operator are stored as an Excel file. Note: Train/test file names should not be contained in the repository path. E.g training/train is not a god path,...

Created: 2012-01-31 | Last updated: 2012-02-01

Credits: Matej Mihelčić Matko Bošnjak tomS

Latex Text Cloud Visualization (1)

• Download

An experiment to visualise my dissertation text within a word cloud. This experiment is configured for Windows. To run it under Linux or Mac, change the configuration file of the tree tagger wrapper.

Created: 2012-01-30 | Last updated: 2012-05-22

Credits: jhermes

Transforming user/item description dataset... (1)

• Download

This workflow provides transformation of an user/item description attribute set, into a format required by attribute based k-NN operators of the Recommender extension. See: http://zel.irb.hr/wiki/lib/exe/fetch.php?media=del:projects:elico:recsys_manual_v1.1.pdf to learn about formats of datasets required by Recommender extension.

Created: 2012-01-30

Data iteration workflow (RP) (1)

• Download

This is a data iteration workflow used to iterate throug query update sets.

Created: 2012-01-29

Credits: Matej Mihelčić Matko Bošnjak

Model update workflow (RP) (1)

• Download

This is a Model update workflow called from data iteration workflow on every given query set. In the Loop operator model and current training set are retrieved from the repository. Model update is performed on a given query set creating new model. Model and updated train set are saved in the repository.

Created: 2012-01-29 | Last updated: 2012-01-30

Credits: Matej Mihelčić

recommender workflow (RP) (1)

• Download

This is a main online update experimentation workflow. It consists of three Execute Process operators. First operator executes model training workflow. Second operator executes online updates workflow for multiple query update sets. The last operator executes performance testing and comparison workflow. Final performance results are saved in an Excel file.

Created: 2012-01-29

Credits: Matej Mihelčić

Model testing workflow (RP) (1)

• Download

This workflow measures performance of three models. Model learned on train data and upgraded using online model updates. Model learned on train data + all query update sets. Model learned on train data only.

Created: 2012-01-29 | Last updated: 2012-01-30

Credits: Matej Mihelčić

Model saving workflow (RP) (1)

• Download

This workflow trains and saves model for a selected rating prediction operator.

Created: 2012-01-29 | Last updated: 2012-01-30

Credits: Matej Mihelčić

Model update workflow (1)

• Download

This is a Model update workflow called from data iteration workflow on every given query set. In the Loop operator model and current training set are retrieved from the repository. Model update is performed on a given query set creating new model. Model and updated train set are saved in the repository.

Created: 2012-01-29 | Last updated: 2012-01-29

Credits: Matej Mihelčić Matko Bošnjak

Data iteration workflow (1)

• Download

This is a data iteration workflow used to iterate throug query update sets.

Created: 2012-01-29

Credits: Matej Mihelčić Matko Bošnjak

Model testing workflow (1)

• Download

This workflow measures performance of three models. Model learned on train data and upgraded using online model updates. Model learned on train data + all query update sets. Model learned on train data only.

Created: 2012-01-29

Credits: Matej Mihelčić

Model saving workflow (1)

• Download

This workflow trains and saves a model for a selected item recommendation operator.

Created: 2012-01-29 | Last updated: 2012-01-30

Credits: Matej Mihelčić

Recommender workflow (1)

• Download

This is a main online update experimentation workflow. It consists of three Execute Process operators. First operator executes model training workflow. Second operator executes online updates workflow for multiple query update sets. The last operator executes performance testing and comparison workflow. Final performance results are saved in an Excel file.

Created: 2012-01-29

Credits: Matej Mihelčić

Loading OWL files (RDF version of videolec... (1)

• Download

The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/). Operator "Build knowledge base" is responsible for collecting data either from OWL files or SPARQL endpoints or RDF repositories and provide it to the subsequent operators in a workflow. In this workflow it is parametrized in this way, that is builds a Sesame/OWLIM repository from the files specified in "Load file" operators. Paths to OWL files are specified as parameter va...

Created: 2012-01-29 | Last updated: 2012-01-29

Semantic clustering (with alpha-clustering... (1)

• Download

The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/) to perform clustering of SPARQL query results based on chosen semantic similarity measure. The measure used in this particualr workflow is a kernel that exploits membership of clustered individuals to OWL classes from a background ontology ("Epistemic" kernel from [1]). Since the semantics of the backgound ontology is used in this way, we use the name "semantic clustering". This ...

Created: 2012-01-29 | Last updated: 2012-01-30

Operator testing workflow (1)

• Download

This workflow is used for operator testing. It joins dataset metafeatures with execution times and performanse measures of the selected recommendation operator. In the Extract train and Extract test Execute Process operator user should open Metafeature extraction workflow. In the Loop Operator train/test data are used to evaluate performanse of the selected operator. Result is remebered and joined with the time and metafeature informations. This workflow can be used both for Item Recommend...

Created: 2012-01-29

Credits: Matej Mihelčić Matko Bošnjak

Metafeature extraction (1)

• Download

This is a metafeature extraction workflow used in Experimentation workflow for recommender extension operators. This workflow extracts metadata from the train/test datasets (user/item counts, rating count, sparsity etc). This workflow is called from the operator testing workflow using Execute Process operator.

Created: 2012-01-29 | Last updated: 2012-01-30

Credits: Matko Bošnjak

Iterate through datasets (1)

• Download

This is a dataset iteration workflow. It is a part of Experimentation workflow for recommender extension. Loop FIles operator iterates through datasets from a specified directory using read aml operator. Only datasets specified with a proper regular expression are considered. Train and test data filenames must correspond e.g (train1.aml, test1.aml). In each iteration Loop Files calles specified operator testing workflow with Execute subprocess operator. Informations about training and t...

Created: 2012-01-29

Credits: Matej Mihelčić Matko Bošnjak

Semantic clustering (with AHC) of SPARQL q... (1)

• Download

The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/) to perform clustering of SPARQL query results based on chosen semantic similarity measure. The measure used in this particualr workflow is a kernel that exploits membership of clustered individuals to OWL classes from a background ontology ("Common classes" kernel from [1]). Since the semantics of the backgound ontology is used in this way, we use the name "semantic clustering". ...

Created: 2012-01-29 | Last updated: 2012-01-29

Semantic clustering (with k-medoids) of SP... (1)

• Download

The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/) to perform clustering of SPARQL query results based on chosen semantic similarity measure. Since the semantics of the backgound ontology is used in this way, we use the name "semantic clustering". The SPARQL query is entered in a parameter of "SPARQL selector" operator. The clustering operator (k-medoids) allows to specify which of the query variables are to be used as clustering criteria. If more ...

Created: 2012-01-29

BLAST (1)

• Download

This is a simple workflow demonstrating a sequence Basic Local Alignment Search Tool (BLAST).                                                                                           

Created: 2012-01-26 | Last updated: 2012-01-26

Credits: Pipeline

Pathways and Gene annotations forQTL region (1)

• Download

This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the mouse, Mus musculus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG path...

Created: 2012-01-20 | Last updated: 2012-01-20

Credits: Bonilla

Item rating predictions collaborative-based (1)

• Download

This workflow takes input 2 as as train set for several item recommendation predictions. We build four different recommendation model which are combined into one model with operator Model Combiner. Then we take input 1 as a test set and apply merged model. Train and test set must contain user_id, item_id and rating attributes which need to have special roles user identification, item identification and label. This workflow uses recommender system extension.

Created: 2012-01-19

Item recommendation hybrid-based workflow (1)

• Download

This workflow takes input 2 as a train set for recommender systems. We build two item recommendation models: item k-NN (collaborative based) and item attribute k-NN (content based). Item attribute k-NN operator takes additional item attributes from input 3. We combine two models with operator model combiner and test performance on test set (input 1). Train and test set must contain user_id and item_id attributes which need to have special roles user identification and item identification. Th...

Created: 2012-01-19

RDKit-bioisosteres (1)

• Download

Implementation of a simple bioisostere replacement workflow using the RDKit (2.0.0) nodes in KNIME (2.5.1). Includes short list of classical bioisostere replacements (not exhaustive), selectable by the functional group to be transformed. We added this control to the workflow as our own internal list of bioisostere replacements generated huge libraries for each structure fed into the workflow. The bioisostere replacement list is stored in a tab separated text file, so can be replaced...

Created: 2012-01-18 | Last updated: 2012-01-18

Credits: sauberns

Attributions: RDKit-pains

FFmpeg convert audio2aac (SOAP) (1)

• Download

Converts supported audio files to AAC using FFmpeg through a SOAP webservice.

Created: 2012-01-16 | Last updated: 2012-01-16

Credits: Rui Castro

ImageMagick convert image2jp2 (SOAP) (1)

• Download

Converts supported image files to JPEG2000 using ImageMagick through a SOAP webservice.

Created: 2012-01-16 | Last updated: 2012-01-16

Credits: Rui Castro

ImageMagick convert image2jp2 (REST) (1)

• Download

Converts supported image files to JPEG2000 using ImageMagick through a REST webservice.

Created: 2012-01-16 | Last updated: 2012-01-16

Credits: Rui Castro

FFmpeg convert audio2aac (REST) (1)

• Download

Converts supported audio files to AAC using FFmpeg through a REST webservice.

Created: 2012-01-16 | Last updated: 2012-01-16

Credits: Rui Castro

Reactome pathways (1)

• Download

This workflow returns a list of pathways gene products are involved in, along with their descriptions and Gene Ontology annotations

Created: 2012-01-16

Credits: Katy Wolstencroft

VM distributional morpheme analysis (1)

• Download

Distributional analysis of the Morphemes from the Voynich Manuskript.

Created: 2012-01-16

Credits: jhermes

PIII distributional morpheme analysis (1)

• Download

Distributional analysis of the Morphemes from the Polygraphia III codebook.

Created: 2012-01-16 | Last updated: 2012-01-16

Credits: jhermes

VM grapheme clustering (1)

• Download

Clustering of Graphemes from the Voynich Manuskript,determined by minimal pair analysis.

Created: 2012-01-16

Credits: jhermes

PIII grapheme clustering (1)

• Download

Clustering of Graphemes from Polygraphia III, determined by minimal pair analysis.

Created: 2012-01-16 | Last updated: 2012-01-16

Credits: jhermes

Import and convert gene list (1)

• Download

This workflow extracts a column of RefSeq gene IDs from a CSV file and then converts them to Unigene identifiers

Created: 2012-01-15 | Last updated: 2012-03-12

Credits: Katy Wolstencroft

getFirstElementDFS (2)

• Download

Returns the first element of a nested list using depth first search. The maximum depth of the input is set to 2. You can savely increase this by increasing the depth of the workflow input port and the beanshell input port. Taverna will wrap the input into a list with correct depth. However this will create a little overhead.

Created: 2012-01-13 | Last updated: 2012-02-13

workflow in systems (1)

• Download

Created: 2012-01-12

Credits: Ahmed hosny

VM text parameters (1)

• Download

Calculation of some basic parameters of the text from the Voynich Manuskript (VMS). Parameters: type count, token count, type token ratio, wordlength, entropy, conditional entropy, coincidence values, random walk values, repeated words and minimal pairs. The VMS text (EVA Interlinear Archive File) is referenced in http://www.myexperiment.org/files/660.html)

Created: 2012-01-11

Credits: jhermes

Polygraphia III encription text parameters (1)

• Download

Calculation of some basic parameters of a text, enciphered with the method that the german ape Johannes Trithemius described in his book Polygraphia III Parameters: type count, token count, type token ratio, wordlength, entropy, conditional entropy, coincidence values, random walk values, repeated words and minimal pairs. Enciphed text (from project Guttenberg, referenced in http://www.myexperiment.org/files/660.html): Melanchton: Confessions (ger)

Created: 2012-01-11 | Last updated: 2012-01-11

Credits: jhermes

Renaissance texts parameters (1)

• Download

Calculation of some basic parameters of renaissance texts written in different languages. Parameters: type count, token count, type token ratio, wordlength, entropy, conditional entropy, coincidence values, random walk values, repeated words and minimal pairs. Texts (from project Guttenberg, referenced in http://www.myexperiment.org/files/660.html): Dee (en), dante (it), descartes (lat), ceasar (anc lat), paracelsus (ger), melanchton (ger)

Created: 2012-01-11 | Last updated: 2012-01-11

Credits: jhermes

Calculation of distances, magnitutes and l... (2)

• Download

Calculation of distances, corrected apparent B magnitude mB-corr and luminosities with values gathered from the HyperLEDA database. This workflow receives a list of galaxy names (hyperLEDA names. ie: KIG0001) and a file with the morphological types of those galaxies Using the name of a galaxy, the workflow querys Hyperleda to extract some properties of this galaxy (J2000 Coordinates, velocity, galactic extinction,log of axis ratio, and the Total B-magnitude ). With this properties it calcula...

Created: 2012-01-10 | Last updated: 2012-01-16

Credits: Stian Soiland-Reyes

Attributions: Calculation of distances, magnitutes and luminosities using HyperLEDA Data involved in RO Propagation of quantities Scripts in RO Propagation of quantites

Item recommendation collaborative-based wo... (1)

• Download

This workflow takes input 2 as a train set for item-k-NN recommender system. The model peformance is evaluated on test set (input 1). This workflow uses recommender system extension. Train and test set must contain user_id and item_id atrributes which need to have special roles user identification and item identification.

Created: 2012-01-09 | Last updated: 2012-01-09

Map a Entrez Gene ID to a Gene Ontology ID (1)

• Download

Created: 2012-01-07

Credits: Egon Willighagen

Hello Anyone (1)

• Download

An extension to helloworld.t2flow - this workflow takes a workflow input "name" which is combined with the string constant "Hello, " using the local worker "Concatenate two strings", and outputs the produced string to the workflow output "greeting".

Created: 2012-01-03 | Last updated: 2014-03-03

Credits: Stian Soiland-Reyes

Attributions: Hello World

Hello World (1)

• Download

One of the simplest workflows possible. No workflow input ports, a single workflow output port "greeting", outputting "Hello, world!" as produced by the String Constant "hello".

Created: 2012-01-03 | Last updated: 2014-03-03

Credits: Stian Soiland-Reyes

[untitled] (1)

• Download

 A KUP domain image segmentation workflow that identifies ans annotates important regions on microscopic Kidney biopsy images (vessels and glomerulus)

Created: 2012-01-03 | Last updated: 2012-01-03

Credits: Charalampos

Propagation of the Solar Energetic Particl... (2)

• Download

use of the processing service to calculate time delays to the planets Inputs: time when propagation should start longitude of starting point on the sun speed of the solar wind error value of solar wind speed traveling speed of energetic particals as percentage of the speed of light

Created: 2011-12-13 | Last updated: 2012-02-03

Credits: Anja Le Blanc HELIO

Propagation of the Co-roationg interaction... (2)

• Download

use of the processing service to calculate time delays to the planets Inputs: time when propagation should start longitude of starting point on the sun speed of the solar wind error speed of the solar wind

Created: 2011-12-13 | Last updated: 2012-02-03

Credits: Anja Le Blanc

Connect flare events with proton events on... (2)

• Download

This workflow uses flares listed in any HELIO HEC flare catalogue (using the semantic mapping service), checks whether these flares are connected to Earth via the Parker spiral, and looks for proton events at earth listed in the goes_proton_event list. The flare listing and the proton listing are combinded into a list of VOTable outputs (one VOTable per flare catalogue with results).

Created: 2011-12-09 | Last updated: 2011-12-13

Credits: Anja Le Blanc

Attributions: Connect flare events with proton events on Earth via propagation model

dcraw (sRGB, ColorInterpolated, FixedWhite... (2)

• Download

Reads a RAW image with these parameters using dcraw and returns the image data as byte array.

Created: 2011-12-08 | Last updated: 2011-12-16

dcraw (sRGB, ColorInterpolated, FixedWhite... (2)

• Download

Reads a RAW image with these parameters using dcraw and returns the image data as byte array.

Created: 2011-12-08 | Last updated: 2011-12-16

dcraw (NoConversion, NoInterpretation, Fix... (4)

• Download

Reads a RAW image with these parameters using dcraw and returns the image data as byte array.

Created: 2011-12-08 | Last updated: 2011-12-16

Match concept profiles (6)

• Download

Purpose of workflow: The workflow can be used to match a set of concept profiles with another set of concept profiles. Result: A list of concepts ordered by their match to the query concept profiles.

Created: 2011-12-02 | Last updated: 2014-07-14

Credits: Marco Roos Kristina Hettne Martijn Schuemie Reinout van Schouwen

Comparison and update values (1)

• Download

This workflow receives two files, the name of a table and the name of a field as input. One of the file should be contain a list of old values (name galaxy and value), and the other one should be a list of new values (name galaxy,value) The workflow makes a comparison between the two files. This comparison will be a list of 7 columns: name of the galaxy, old value, old error, new value, new error, difference of value, difference of error. In other hand, this workflow makes a sql script with ...

Created: 2011-11-30 | Last updated: 2011-11-30

Gathering galaxy properties using HyperLEDA (2)

• Download

The user provides an ASCII text file with a list of galaxy names, and the workflow queries the HyperLEDA database and parses the response with the help of regular expressions included in simple Python scripts. The result of the workflow is a series of ASCII text files with the values of the equatorial coordinates in J2000 epoch, the velocities in km/s, the dust extinction coefficient Ag, the axis ratio of the isophote 25 mag/arcsec2 logr25 and the apparent total B magnitude BT. The performanc...

Created: 2011-11-30 | Last updated: 2013-03-08

Propagation of physical quantities in the ... (3)

• Download

This workflow takes as input a file for each of this properties: J2000 Coordinates, velocity, galactic extinction, log of axis ratio, and the Total B-magnitude. With this properties it calculates the distance of the galaxy and, in other hand, the total apparent corrected B-magnitude. It takes account if the velocity of the galaxy is lower than a threshold (1000km/s), it can not be possible to calculate the distance so, in those cases the distance will be "NaN". At the end, it calculates the ...

Created: 2011-11-30 | Last updated: 2013-04-22

Literacy Rate and GDP/Capita Increase (Per... (1)

• Download

This is a workflow for a Cyberinfrastructure class (Fall 2011) at Syracuse University. It takes information from GapMinder and runs it through a workflow to produce a graph. The original data sets can be found here: https://spreadsheets.google.com/pub?key=pyj6tScZqmEdrsBnj2ROXAg&gid=0 (Literacy rate, adult total) https://spreadsheets.google.com/pub?key=phAwcNAVuyj1jiMAkmq1iMg&gid=0 (Income per person)

Created: 2011-11-28 | Last updated: 2011-11-28

Credits: Kayleigh Ayn Bohémier

Attributions: Spreadsheet Import Example

Handling data and time example (1)

• Download

This process shows how date and time formats can be converted from arbitrary formats to other arbitrary formats with the operators "Nominal to Date" and "Date to Nominal".

Created: 2011-11-28

[untitled] (2)

• Download

This is a workflow for a Cyberinfrastructure class (Fall 2011) at Syracuse University. It takes information from GapMinder and runs it through a workflow to produce a graph. The original data sets can be found here: https://spreadsheets.google.com/pub?key=pyj6tScZqmEdrsBnj2ROXAg&gid=0 (Literacy rate, adult total) https://spreadsheets.google.com/pub?key=pyj6tScZqmEdIyrBS31XAaw&gid=0 (Income share of poorest 20%)

Created: 2011-11-27 | Last updated: 2011-11-27

Credits: Kayleigh Ayn Bohémier

Attributions: Spreadsheet Import Example Broccoli: A State Comparison

Comparison of Birth and Death Rates for a ... (1)

• Download

This workflow extracts the relevant data from two spreadsheets, formats the data strings, and puts that data through a REST to Google Charts. Data collected for this project comes from data.un.org. Currently, the workflow supports data from only one country at a time (data from data.un.org can be filtered and exported directly from the website). Data from the Live births by month and Deaths by month works best with this workflow.

Created: 2011-11-27 | Last updated: 2011-11-27

Credits: tpacurtis

FetchandDisplaySpecies (3)

• Download

This workflow uses GBIF to search and report species occurrence data and then displays them on Google Earth. An interactive step then allows you to alter the co-ordinates of data displayed.

Created: 2011-11-27 | Last updated: 2011-11-29

Credits: Alan Williams

NSF Funds dataset US dollar to Euro curren... (1)

• Download

This workflow uses a 2012 Fiscal Year dataset from the National Science Foundation (NSF), a currency conversion web service from WebservicesX.NET and processes data using the workflow tool Taverna.  It converts US dollars from a spreadsheet to Euros.

Created: 2011-11-25 | Last updated: 2011-11-25

Credits: Trisha Adamus

Image files comparison using histograms an... (2)

• Download

This workflow extracts histogram and profile features from image file applying image processing command line tool. Necessary configuration files are stored on Github (https://github.com/openplanets/scape/tree/master/pc-qa-toolwrapper). As a template for creation of image workflows was used xa-toolwrapper project from Sven Schlarb (https://github.com/openplanets/scape/tree/master/xa-toolwrapper). This workflow provides WSDL web service that wraps command line tool with tho options ‘extra...

Created: 2011-11-22 | Last updated: 2011-11-23

Credits: Roman

Pathways and Gene annotations forQTL region (1)

• Download

This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the mouse, Mus musculus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG path...

Created: 2011-11-21 | Last updated: 2011-11-21

Credits: Prashanth

Pathways and Gene annotations forQTL region (2)

• Download

This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the mouse, Mus musculus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. The Entrez and UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG path...

Created: 2011-11-21 | Last updated: 2011-11-21

Credits: Prashanth

Tag Clustering (TaCl) (1)

• Download

This is a sample process for a tag clustering. See http://www-ai.cs.uni-dortmund.de/SOFTWARE/TaCl/index.html

Created: 2011-11-17 | Last updated: 2011-11-17

Compare OCR result of original and BW vers... (1)

• Download

 Use the word based edit distance to compare the OCR result of the original and a binarised version of an image

Created: 2011-11-15 | Last updated: 2011-11-15

Credits: perdalum IMPACT-myGrid-Hackathon

Attributions: Calculate edit distance based on words

Associate a Shock at Earth with Flare and ... (2)

• Download

Using start date and end date all shock events at Earth are backpropagated to the Sun. Arround the time all flares (above certain levels) and cmes are assoicated. The possition of the flare and speed of the CME are used to forward propagate the event to Mars.

Created: 2011-11-15 | Last updated: 2012-07-20

Credits: Anja Le Blanc David PS

Connect flare events with proton events on... (4)

• Download

This workflow uses flares listed in the goes_sxf_flare list, checks wether this flare is connected to Earth via the Parker spiral, and looks for proton events at earth listed in the goes_proton_event list. The flare listing and the proton listing is combinded into a VOTable output.

Created: 2011-11-15 | Last updated: 2012-05-15

Credits: Anja Le Blanc