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Showing 1566 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
1505?size=60x60 Gb James Eales

Workflow Load PDF from directory (1)

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This workflow will automate the reading of a set of PDF files stored in a single directory (the path to which should be supplied as a single input value). This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow.  

Created: 2010-02-19 | Last updated: 2011-12-13

Credits: User James Eales

Taverna 2
Uploader
1505?size=60x60 Gb James Eales

Workflow PDF to plain text (1)

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This workflow will extract the plain text content of PDF files supplied to the input port.  You can connect the Load PDF from directory workflow to this workflows input. We recommend you send the output from this workflow to the Clean plain text workflow, because the PDF to text process can add characters into the text that are XML-invalid and therefore can not be sent to most services as plain text.  Another way round this problem is to encode the text as Base64 using the handy loc...

Created: 2010-02-19 | Last updated: 2011-12-13

Credits: User James Eales

Taverna 2
Uploader
1505?size=60x60 Gb James Eales

Workflow Sentence splitting (1)

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This workflow will attempt to split up text into sentences, returning a list of sentences to the output port.  The sentence splitting service makes use of the OpenNLP sentence detector and has been trained to work on english text. This workflow can be used to provide input to the Termine with c-value threshold workflow. This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow.

Created: 2010-02-19 | Last updated: 2011-12-13

Credits: User James Eales

Taverna 2
Uploader
1505?size=60x60 Gb James Eales

Workflow Termine with c-value threshold (1)

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This workflow accepts a list of sentences from a single document and returns the terms found by the TerMine web service. It also allows you to set a threshold c-value score so that only terms with a user-controlled probability (of being a real term) are returned as an output.   To get sentences to supply to this workflow you can use the sentence splitting workflow.  The TerMine service (used in this workflow) only accepts text in ASCII encoding, so you should also use the Clean p...

Created: 2010-02-19 | Last updated: 2011-12-13

Credits: User James Eales

Taverna 2
Uploader
1505?size=60x60 Gb James Eales

Workflow Terms from collection of PDF files (2)

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This workflow will give you a set of candidate terms for each PDF document in a user-specified directory. You can also specify a c-value threshold that will restrict the terms to those with higher scores. This workflow was created using only nested workflows.  These workflow components work on their own and can be linked together to form more complex workflows such as this. You can view the text mining workflow components in this pack. If you receive errors when running this workflow t...

Created: 2010-02-19 | Last updated: 2011-12-13

Credits: User James Eales

Taverna 2
Uploader
1505?size=60x60 Gb James Eales

Workflow Terms from collection of text files (1)

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This workflow will give you a set of candidate terms for each text file in a user-specified directory. You can also specify a c-value threshold that will restrict the terms to those with higher scores. This workflow was created using only nested workflows.  These workflow components work on their own and can be linked together to form more complex workflows such as this. You can view the text mining workflow components in this pack. If you receive errors when running this workflow then...

Created: 2010-02-22 | Last updated: 2011-12-13

Credits: User James Eales

Taverna 2
Uploader
Avatar Rodriguez

Workflow Tutorial Taverna (1)

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No description

Created: 2010-02-26 | Last updated: 2010-02-26

Credits: User Rodriguez

Taverna 2
Uploader
Avatar Rodriguez

Workflow Taverna Tutorial2 (1)

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No description

Created: 2010-02-26 | Last updated: 2010-02-26

Credits: User Rodriguez

Attributions: Workflow EBI_InterProScan for Taverna 2

Taverna 2
Uploader
1650?size=60x60 Sa Fahad Alqahtani

Workflow Transciption (DNA into RNA) (1)

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This workflow allows a user to transcibe DNA into RNA.

Created: 2010-03-05 | Last updated: 2010-03-05

Taverna 2
Uploader
482?size=60x60 Gb Rory

Workflow Get locations from postcode (1)

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 This workflow will return all the areas that correspond to a postcode. Enter the first part of the postcode only, e.g. SW19

Created: 2010-03-08 | Last updated: 2010-03-08

Credits: User Rory

Taverna 2
Uploader
4399?size=60x60 Gb Paul Fisher

Workflow Get Kegg Pathway information (1)

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This workflow gets a series of information relating to a list of KEGG pathways supplied to it. It also removes any null values from a list of strings. Example input: path:mmu04010 path:mmu05014

Created: 2010-03-10 | Last updated: 2010-03-10

Credits: User Paul Fisher

Taverna 2
Uploader
Avatar Wicker

Workflow OpenTox Get Algorithms on TUM server (6)

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Get URIs of all available algorithms on TUM server

Created: 2010-05-11 | Last updated: 2011-05-11

Taverna 2
Uploader
Avatar Wicker

Workflow OpenTox Apply Algorithm (7)

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Apply an OpenTox algorithm

Created: 2010-05-11 | Last updated: 2011-05-11

Taverna 2
Uploader
Avatar Wicker

Workflow OpenTox Apply Model On Dataset (3)

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Apply a model to predict a dataset

Created: 2010-05-11 | Last updated: 2010-05-11

Taverna 2
Uploader
Avatar Wicker

Workflow OpenTox Handle Task (8)

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Waits for a task to be finished and returns resulting URI

Created: 2010-05-18

Taverna 2
Uploader
Avatar Wicker

Workflow OpenTox Get Datasets (3)

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Gets a list of available data set URIs

Created: 2010-05-11

Taverna 2
Uploader
1562?size=60x60 Gb Jannetta

Workflow Kegg pathway diagrams (1)

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Find pathways in which all the genes in the list are involved. For each pathway draw the pathway diagram.for each protein draw a diagram of the Kegg pathway that its protein is involved in and where available visualise the structures

Created: 2010-03-13

Credits: User Jannetta

Taverna 2
Uploader
1562?size=60x60 Gb Jannetta

Workflow Kegg pathway diagrams (3)

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Find pathways in which all the genes in the list are involved. For each pathway draw the pathway diagram.Find pathways in which all the genes in the list are involved. For each pathway draw the pathway diagram. Colour all enzyme boxes with colours specified. This workflow still has one problem. The list of colours have to be specified. I would like ideally to only except one background and one foreground colour and expand that to a list with length equivalent to the number of enzymes found - ...

Created: 2010-03-19 | Last updated: 2010-03-19

Taverna 2
Uploader
Avatar Gregg Iceton

Workflow Compare two genomes for similarity (4)

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This workflow takes the file path to two genome nucleotide files in fasta format and requests a minimum similarity required from the user.  The genomes are aligned according to the M-GCAT algorithm (http://alggen.lsi.upc.es/recerca/align/mgcat/intro-mgcat.html) and the genome similarity parsed out of the resultant log file.  Output is either 0 (genome similarity less than required similarity) or 1 (genome similarity equal to or greater than the required similarity). NB - The file p...

Created: 2010-03-17 | Last updated: 2010-03-17

Credits: User Gregg Iceton

Taverna 2
Uploader
254?size=60x60 Cn Peter Li

Workflow Calculating frequencies of gene expression... (1)

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This workflow retrieves data from the MaxD microarray database and calculates the frequencies of gene expression levels using an R script

Created: 2010-03-15

Credits: User Peter Li

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