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Showing 1566 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
Avatar Amrish Mahes

Workflow CPGP Summary table (2)

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Requirements: Have MySQL installed with a database called mydb or please create one. Have a mysql connector file. This can be downloaded from mysql.com. Rename the downloaded file to mysql-connector-java.jar and place it in the the local lib file of Taverna as written on the dependencies tab. Choose this dependency by rightclicking a beanshell script and selecting it for the whole workflow as system classloader. Download the Peregrine SKOS CLI from: https://trac.nbic.nl/biosemantics/downlo...

Created: 2014-05-27 | Last updated: 2014-06-30

Credits: User Amrish Mahes

Taverna 2
Uploader
Avatar Ondrej Klima

Workflow template (1)

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No description

Created: 2014-05-28

Credits: User Ondrej Klima

Taverna 2
Uploader
Avatar Ondrej Klima

Workflow 3Drec (1)

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No description

Created: 2014-05-28

Credits: User Ondrej Klima

Taverna 2
Uploader
Avatar Ondrej Klima

Workflow Anot (1)

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No description

Created: 2014-05-28

Credits: User Ondrej Klima

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Imagemagick identify - image size (1)

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Extracts the image size using imagemagick identify

Created: 2014-06-16

Credits: User Markus Plangg

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow RetrivingJob1 (1)

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Get Retrieve result of a job for which you possess the ID

Created: 2014-06-17 | Last updated: 2014-06-24

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Parametric Bootstrap or Resample a project... (3)

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The Parametric Bootstrap or Resample a projection matrix Workflow provides an environment to resample a projection matrix using a multinomial distribution for transitions and a log normal distribution for fertilities (Stubben, Milligan, and Nantel. 2011). The resample is based on number of plants surveyed. The projection matrix A is first split into separate transition and fertility matrices. Dead fates are added to the transition matrix and the columns are then sampled from a Multinomial dis...

Created: 2014-06-18 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model analysis v12

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow split_by_newline (1)

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Splits a string into a list of strings. The initial string must use newline as a separator

Created: 2014-06-24 | Last updated: 2014-10-02

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Damping ratio (2)

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The Damping ratio Workflow provides an environment to calculate the damping ratio of several matrices and plot them. The damping ratio can be considered as a measure of the intrinsic resilience of the population, describing how quickly transient dynamics decay following disturbance or perturbation regardless of population structure, the larger the p, the quicker the population converges. ============================================================= This workflow requires an instance of Rse...

Created: 2014-06-25 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Gerard Oostermeijer

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Stages vectors plots, Survival and Growth ... (2)

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The Stages vectors plots, Survival and Growth rate curves Workflow provides an environment to perform several analyses on a series of stage-matrices: - Survival values calculations per stage per year and its respective plot; - Growth rates (lambda) calculations per year and its respective plot; - Stage Vectors calculations and their respective plots. ====================================================== This workflow requires an instance of Rserve on localhost This workflow has been creat...

Created: 2014-07-02 | Last updated: 2014-08-29

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Gerard Oostermeijer

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Evaluate MrBayes Run on convergence, model... (1)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2014-07-04

Credits: User Saverio Vicario

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Imagemagick tiff/jp2/png/jpeg (2)

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Converts tiff/jp2/png/jpeg images using imagemagick convert. The target format can be seleced with the format parameter.

Created: 2014-07-07 | Last updated: 2014-07-07

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Graphicsmagick tiff/jp2/png/jpeg (1)

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Converts tiff/jp2/png/jpeg images using graphicsmagick convert. The target format can be seleced with the format parameter.

Created: 2014-07-07 | Last updated: 2014-07-07

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Openjpeg tools - tiff2jp2 (1)

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Converts tiff to jp2 images using Openjpeg tools.

Created: 2014-07-08 | Last updated: 2014-07-08

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Jpylyzer - JP2 Image characteristics (1)

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Extracts image width, image height, file size, and validity of a jpeg2000 image.

Created: 2014-07-08 | Last updated: 2014-07-08

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow EBI_InterproScan_broken (1)

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This workflow performs an interproscan at the EBI on sequences provided as input. The output is provided as text and xml. This workflow uses the new EBI services, which are asynchronous and require looping over the nested workflow (Status) until the workflow has finished. Many of the EBI services now work in this way, so you can use this workflow as an example of the invocation pattern and looping configuration. Note that this workflow is deliberately broken

Created: 2014-07-09

Credits: User Alan Williams User Katy Wolstencroft User Hamish McWilliam

Attributions: Workflow EBI_InterproScan_NewServices

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Demonstration of configurable iteration (1)

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This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Created: 2014-07-09

Credits: User Alan Williams

Attributions: Workflow Demonstration of configurable iteration

Taverna 2
Uploader
1405?size=60x60 At Sven

Workflow ARC to WARC Migration with CDX Index and w... (1)

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Workflow for migrating ARC to WARC and comparing the CDX index files (Linux). The workflow has an input port “input_directory” which is a local path to the directory containing the ARC files, and an input port “output_directory” which is the directory where the workflow outputs are created. The files in the input directory are migrated using the “arc2warc_migration_cli” tool service component to perform the migration. The “cdx_creator_arc” and “cdx_creator_warc” tool service components creat...

Created: 2014-07-09

Credits: User Sven

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow String upload (1)

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The component uploads the string within the InputBody to the File_name within the fixed WebDAV

Created: 2013-09-16 | Last updated: 2014-02-03

Taverna 2
Uploader
1780?size=60x60 Gb Donal Fellows

Workflow SCAPE Workshop demo workflow (2)

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This is an updated version of the SCAPE workshow demonstrator workflow, based on the workflow defined by Sven Schlarb at http://wiki.opf-labs.org/display/SP/Workflows+Exercise+Worksheet

Created: 2013-09-16 | Last updated: 2013-09-19

Credits: User Donal Fellows User Sven Network-member SCAPE

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Funded by: BioVeL, EPSRC, JISC, Microsoft

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