Workflows

Extract DEC and RA from whitespace separat... (2)

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This workflow extracts DEC and RA coordinates from a whitespace seperated file and this is a silly description.

Created: 2012-05-10 | Last updated: 2012-09-24

Credits: Stian Soiland-Reyes

Mp3ToWav Mig+QA (2)

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Migrates Mp3 files from input List to Wav files and performs QA. The QA steps include File Format Validation, Significant Property Comparison and migrationQA file content comparison (all CLI). This workflow matches solution SO4 on the SCAPE opf wiki, see http://wiki.opf-labs.org/display/SP/SO4+Audio+mp3+to+wav+Migration+and+QA+Workflow

Created: 2012-05-21 | Last updated: 2013-04-24

Credits: Bolette Jurik

Watershed (2)

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Local machine example

Created: 2012-05-21 | Last updated: 2012-05-21

Credits: Jorgejesus

Sesame service to get the RA and DEC of a ... (1)

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No description

Created: 2012-05-23

Getting information from LEDA service (1)

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No description

Created: 2012-05-23

Extract logr25 from LEDA service (1)

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No description

Created: 2012-05-23 | Last updated: 2012-05-24

Calculating the internal extinction with d... (3)

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No description

Created: 2012-05-23 | Last updated: 2015-03-25

Example of jdbc (1)

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No description

Created: 2012-05-24 | Last updated: 2012-05-24

Get data and images for a date +/- 12 hour... (1)

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From the date as input date +/- 12 hours of data from the MLSO web page is collated. Images for up to three images (closest to date; -1; +1) are created via autoplot

Created: 2012-05-24 | Last updated: 2012-05-24

Credits: Anja Le Blanc

Convert table to CDS format (1)

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It converts a csv file (comma separated values) to the CDS format. It also provides relevant information to create the ReadMe file. The first row in the input file must be the column names. If you want to run this workflow, you have to install astrotaverna plugin. You can easyly cusomize the workflow to provide a votable or fits table as input.

Created: 2012-05-28 | Last updated: 2012-05-28

Credits: Julian Garrido

Anatomical Atlas Generation (1)

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Computes an anatomical atlas based on a set of patient images using registration methods. This workflow is automatic and does not require user interaction. The anatomical atlas is composed of a mean image and the set of transformations for each patient's between the mean image and the patient image. The atlas can be used to segment the mean image once and propagate the segmentation results to each patient image automatically. This workflow has been tested using GIMIAS-1.5 (open source) with ...

Created: 2012-05-29 | Last updated: 2012-05-29

Credits: Gimias

[untitled] (1)

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No description

Created: 2012-06-02 | Last updated: 2012-06-02

Credits: Neroptit

Image Characterisation - Fits (Extended) (1)

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Extracts metadata from images.

Created: 2012-06-06 | Last updated: 2012-06-06

Credits: Markus Plangg

Gaussian Blur (1)

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Convolves the image with a Gaussian kernel wherein the Gaussian has a standard deviation specified by the user ("sigma") and the kernel width in each dimension is 6 times the standard deviation of the Gaussian. You can find more details here

Created: 2012-06-13 | Last updated: 2012-06-13

ASA_IM__0P (1)

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No description

Created: 2012-06-13 | Last updated: 2012-06-13

Credits: Joel Wright

[untitled] (1)

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No description

Created: 2012-06-13 | Last updated: 2012-06-13

Credits: Joel Wright

DatabaseID to ConceptID (7)

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Purpose: This workflow maps input Identifiers, common database identifiers, to the Concept Identifiers from the EMC ontology. Result: Concept Identifiers from the EMC ontology. Comments: Database: one of CAS, DRUG, etc. The supported databases are listed below (database, description, example). CAS, Chemical Abstracts Service registry number, 64-17-5. DRUG, Drug Bank, DB00316. AF, Affymetrix, 200007_at. CHEB, ChEBI, 16236. CHID, ChemIDplus, 0000050000. EG, Entrez-Gene, 3064. GO, Gene Ontol...

Created: 2012-06-25 | Last updated: 2014-07-14

Credits: Marco Roos Martijn Schuemie Reinout van Schouwen BioSemantics

SNP_ID2EntrezGene_ID (4)

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Purpose: The workflow maps a SNP (dbSNP id) to a gene (EntrezGene id). Author comments: The window for gene inclusion can be set using the set_width parameter. This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.

Created: 2012-06-26 | Last updated: 2013-03-11

Credits: Kristina Hettne Harish Dharuri

Find Supporting Documents (6)

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This workflow finds documents that serve as evidence for the association between two concepts. Results: Document titles Document identifiers There seems to be a bug at the moment, since it returns empty values.

Created: 2012-06-26 | Last updated: 2014-07-14

Credits: Kristina Hettne Marco Roos Reinout van Schouwen Martijn Schuemie BioSemantics

Find periods of time where two ILS objects... (2)

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Inputs: name of target_obj of ILS of two objects and a number of degrees which these obejcts are allowed to be appart in hci longitude coordinates. Output VOTable of time periods where these two objects are closer than +/- input angle together.

Created: 2011-11-04 | Last updated: 2011-11-18

Credits: Anja Le Blanc

Basic Call of HELIO Coordinate Transformat... (1)

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Transforms an input VOTable Coordinate set to a specified output VOTable Coordinate set. This workflow performs some remote computation and may take some time to complete.

Created: 2011-11-08 | Last updated: 2011-11-08

Credits: Anja Le Blanc

Basic Call of HELIO Coordinate Transformat... (2)

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Transforms an input VOTable Coordinate set to a specified output VOTable Coordinate set. This workflow performs some remote computation and may take some time to complete.

Created: 2011-11-09 | Last updated: 2012-07-09

Credits: Anja Le Blanc

Attributions: Basic Call of HELIO Coordinate Transformation Service

Sample IMPACT hackathon workflow (1)

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Workflow that implements the Use Case for Group 2 at the IMPACT/Taverna hackathon. What it does is to take the URL of a TIFF image and compute the Levenshtein difference between the OCR output of the uncompressed version with various ones compressed at various bit rates.

Created: 2011-11-14 | Last updated: 2012-06-19

Credits: Donal Fellows

Calculation of distances, magnitutes and l... (4)

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Calculation of distances, corrected apparent B magnitude mB-corr and luminosities with values gathered from the HyperLEDA database. This workflow receives a list of galaxy names (hyperLEDA names. ie: KIG0001) and a file with the morphological types of those galaxies Using the name of a galaxy, the workflow querys Hyperleda to extract some properties of this galaxy (J2000 Coordinates, velocity, galactic extinction,log of axis ratio, and the Total B-magnitude ). With this properties it calcula...

Created: 2011-11-14 | Last updated: 2012-01-11

Example of conditional invocation (1)

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This workflow demonstrates how nested workflows can be conditionally invoked

Created: 2011-11-15 | Last updated: 2011-11-15

Credits: Alan Williams