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Showing 1566 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
Avatar De Robert Kulawik
Project Biovel

Workflow BioVeL ESW DIFF - ENM Statistical Workflow... (16)

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The ENM Statistical Difference Workflow (ESW DIFF) allows the computation of the extent and intensity of change in species potential distribution through computation of the differences between two raster layers using the R statistical environment (R Core Team 2013). The difference file is computed from two input files (in this case present projection and 2050 projection) coming from the Ecological Niche Modelling (ENM) Workflow (http://www.myexperiment.org/workflows/3355). The difference bet...

Created: 2013-07-08 | Last updated: 2016-06-22

Credits: User Robert Kulawik

Taverna 2
Uploader
3689?size=60x60 Es Julian Garrido

Workflow Find asteroids in images from CAHA observa... (1)

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It analyzes images from CAFOS instrument in Calar Alto Observatory. It uses SkyBot catalog in order to identify objects in the Solar System. It includes a double check to avoid objets that are not asteroids (comparing with USNO and 2MASS catalogs). The result is a VOTable of asteroids

Created: 2013-07-17

Credits: User Julian Garrido

Attributions:

Taverna 2
Uploader
4056?size=60x60 Nl Sander van boom

Workflow wf4ever_PDF2TXT2Solr_Database (1)

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This workflow extracts the text of a .pdf file and stores it in a .txt file. Then it stores the .txt file in a Solr database.

Created: 2013-07-24

Taverna 2
Uploader
4056?size=60x60 Nl Sander van boom

Workflow wf4ever_document_extraction_and_storage (1)

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The workflow uses parts of the existing BioAid workflow by Marco Roos (http://www.myexperiment.org/workflows/74.html) The workflow stores found articles in a Solr database. Make sure that Solr is running in the correct directory (stored in the Solr_directory value).

Created: 2013-07-24 | Last updated: 2013-08-29

Taverna 2
Uploader
4056?size=60x60 Nl Sander van boom

Workflow PubMed Search and Solr storage (5)

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Based on the work of Fisher: This workflow takes in a search term, are passed to the eSearch function and searched for in PubMed. I extended by removing outputs and text extraction and addded an automatic Solr storage process using a post.jar, specified by the user. Before running this workflow, make sure that a solr server is up and running and the variable attached to the SolrImport process contains the correct path. Dependencies: - Solr

Created: 2013-07-25 | Last updated: 2013-08-26

Credits: User Sander van boom

Attributions: Workflow PubMed Search

Taverna 2
Uploader
4054?size=60x60 Sirisha Hesketh

Workflow Query EVS by chromosomal position (1)

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The workflow takes a list of chromosomal positions (in the format chr:pos e.g. 2:139574) and returns a selection of data in the Exome Variant Server (http://evs.gs.washington.edu/EVS/).

Created: 2013-07-26 | Last updated: 2013-07-26

Credits: User Sirisha Hesketh

Taverna 2
Uploader
4057?size=60x60 Es Juandesant

Workflow CSV to VOTable importer (2)

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This module provides a VOTable representation of the CSV file being pointed by the csv_file_path, either as a POSIX local file path, or a URL.

Created: 2013-07-29 | Last updated: 2013-07-29

Credits: User Juandesant Network-member AMIGA Network-member Wf4Ever

Taverna 2
Uploader
Avatar De Sonja Holl

Workflow ENM Maxent workflow used for optimization (1)

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This workflow was used for the optimization of the Maxent algorithm from the openModeller toolbox (http://openmodeller.sourceforge.net/). The workflow uses 10-fold cross-validation and then calculates the average AUC, which can be used as fitness value during parameter optimization.

Created: 2013-08-09 | Last updated: 2013-09-04

Credits: User Sonja Holl User Renato De Giovanni

Taverna 2
Uploader
Avatar De Sonja Holl

Workflow ENM SVM workflow used for optimization (1)

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This workflow was used for the optimization of the SVM algorithm from the openModeller toolbox (http://openmodeller.sourceforge.net). The workflow uses 10-fold cross-validation and then calculates the average AUC, which can be used as fitness value during parameter optimization.

Created: 2013-08-09 | Last updated: 2013-09-04

Credits: User Sonja Holl User Renato De Giovanni

Taverna 2
Uploader
3194?size=60x60 Hu Ferenc HORVATH
Project Biovel

Workflow Biome-BGC ESI version 1.4.1 (3)

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Biome-BGC is a process-based biogeochemical model that can be used to simulate carbon, nitrogen and water fluxes of different terrestrial ecosystems. The model can help us to quantify a broad range of ecosystem service indicators. These newly developed measures include: annual wood increment, yearly production of grasslands or croplands, total average carbon stock, annual evapotranspiration, damping of ecosystem daily water outflow, living and dead biomass protecting the soil against erosion,...

Created: 2013-08-12 | Last updated: 2014-10-04

Credits: User Ferenc HORVATH User Dora Krasser User Peter Ittzes Network-member BioVeL

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Matrix Population Model construction and a... (3)

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The Matrix Population Models Workflow provides an environment to create stage-matrices with no density dependence and to perform several analyses on them: - Eigen analysis; - Age specific survival; - Generation time (T); - Net reproductive rate (Ro); - Transient Dynamics; - Bootstrap of observed census transitions (Confidence intervals of lambda); - Survival curve; - Keyfitz delta; - Cohen's cumulative distance. If multiple year transitions are selected, the results will be ordered by year. ...

Created: 2013-08-13 | Last updated: 2014-07-04

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population Workflow Matrix Population Model construction and analysis Workflow Eigen analysis Workflow Age specific analysis Workflow Transient Dynamics. Workflow Generation time (T) Workflow Net reproductive rate (Ro) Workflow Bootstrap of observed census transitions. Blob Demographic data Gentiana pneumonanthe 1987-1988 from Terschelling File.

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow When do the Fastest type II CME should be ... (2)

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The fastest CME is found from an interval of time, and propagated to Earth, in two steps, first to obtain the Solar wind speed at Earth and then propagated again with a more reasonable CME speed. The output produces Min-Max ETAs for each object in the heliosphere and the plots of the final propagation model. This Workflow was produced as one of the challenges in the HELIO CDAW-IV hosted at TCD

Created: 2012-10-21 | Last updated: 2013-03-20

Credits: User David PS User Eoincar User Gab User Baptiste Cecconi User Shanem User Jbyrne User Florian Mayer User Natasha User A lynnyk

Attributions: Workflow LASCO_CME_QUERY Workflow LASCO_CME_QUERY Workflow MDES simple execution Workflow timeToTimeRange Workflow Forward CME propagation model (SHEBA) - defined outputs Workflow When did the fastest type II CME happened? Workflow Goes Flare Check WF Workflow 100CME_task1 Workflow Extract average Solar wind speed from ACE data

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow Back CIR-CME propagation model (1)

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With a observing time at an object and the type of PM that you want to run executes it and provides the plots and the time and longitude where it should be seen the origin of the event.

Created: 2012-10-24

Credits: User David PS User Anja Le Blanc

Attributions: Workflow CME backwards propagation Workflow Co-rotating Interaction Regions backwards propagation

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow Solar Wind properties and plot (1)

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Using HELIO-MDES this workflow provides some properties of the solar wind from an input date and a mission and the plot +/-1 day for context.

Created: 2012-10-25

Credits: User David PS

Attributions: Workflow MDES simple execution

Taverna 2
Uploader
Avatar Ie Eoincar

Workflow Extract average Solar wind speed from ACE ... (1)

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It reads the data coming from a MDES (HELIO) query and calculates the average Solar Wind speed. Notice that it just works for ACE as other missions could have the columns in different order.

Created: 2012-10-30

Credits: User Eoincar

Taverna 2
Uploader
Avatar Michael Smith

Workflow Number of bonds/atoms generator from Chemi... (1)

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No description

Created: 2012-10-30 | Last updated: 2012-10-30

Credits: User Michael Smith

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Creation of a stage matrix model from demo... (2)

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This workflow create a stage matrix model based on two years census data of tagged or mapped individuals of an animal or plant population. Each annual census describes for each individual its life stage, reproductive output (estimated number offprings) and whether or not it is a new recruit. The workflow converts this data into a stage matrix model from 1 year to 2 that contains transitions probabilities from each stage to the next. This workflow has been created by the Biodiversity Virtual...

Created: 2012-11-01 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Blob Demographic data Gentiana pneumonanthe 1987-1988 from Terschelling File.

Taverna 2
Uploader
1253?size=60x60 Gb Anja Le Blanc

Workflow Matching flare events to active regions (1)

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No description

Created: 2012-11-01

Credits: User Anja Le Blanc

Taverna 2
Uploader
4196?size=60x60 Biodiversity eLaboratory
Project Biovel

Workflow Matrix Population Model construction and a... (3)

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This workflow is deprecated. To obtain a more recent version of this workflow, please refer to: http://www.myexperiment.org/packs/483.html For historic access to this workflow, please view an earlier version.

Created: 2012-11-02 | Last updated: 2014-09-17

Credits: User Jon Giddy User Gerard Oostermeijer User Maria Paula Balcazar-Vargas

Taverna 2
Uploader
4196?size=60x60 Biodiversity eLaboratory
Project Biovel

Workflow Matrix Population Model construction and a... (2)

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This workflow is deprecated. To obtain a more recent version of this workflow, please refer to: http://www.myexperiment.org/packs/483.html For historic access to this workflow, please view an earlier version.

Created: 2012-11-02 | Last updated: 2014-09-17

Credits: User Jon Giddy User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Eigen analysis (3)

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The Eigen analysis results are a set of demographic statistics: 1) Lambda or dominant eigenvalue: The population will be stable, grow or decrease at a rate given by lambda: eg: ? = 1 (population is stable), ? > 1 (population is growing) and finally ? < 1 (populatiopn is decreasing) . 2) The stable stage distribution: It is the proportion of the number of individuals per stage and it is given by (w). Elasticity and Sensitivity: Sensitivity and elasticity analyses are prospective analyses....

Created: 2012-11-02 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Age specific analysis (3)

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The age specific analysis workflow gives the basic information on age-specific survival, this includes the mean, variance and coefficient of variation (cv) of the time spent in each stage class and the mean and variance of the time to death. Fundamental matrix (N): is the mean of the time spent in each stage class. Variance (var): is the variance in the amount of time spent in each stage class. Coefficient of variation (cv): is the coefficient of variation of the time spent in each class...

Created: 2012-11-02 | Last updated: 2014-07-24

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Transient Dynamics. (3)

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This workflow produces plots of the short-term dynamics and convergence to stable stage distribution using stage vector projections. ============================================================ This workflow has been created by the Biodiversity Virtual e-Laboratory (BioVeL http://www.biovel.eu/) project. BioVeL is funded by the EU’s Seventh Framework Program, grant no. 283359. This workflow was created based on Package ‘popbio’ in R. Stubben, C & B. Milligan. 2007. Estimating and Anal...

Created: 2012-11-02 | Last updated: 2014-07-31

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Generation time (T) (2)

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The time T required for the population to increase by a factor of Ro (net reproductive rate) e.g.: If Ro (net reproductive rate) = 5.56 and T (generation time) = 8.055 The average plant of the species Gentiana pneumonanthe in Terschelling in the year 1987 replaced itself with almost six new plants and took approximately 8.05 years to do so. ========================================================= This workflow has been created by the Biodiversity Virtual e-Laboratory (BioVeL http://www.bio...

Created: 2012-11-02 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Net reproductive rate (Ro) (2)

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This workflow calculates the net reproductive rate (Ro) that is mean number of offspring by which a newborn individual will be replaced by the end of its life, and thus the rate by which the population increases from one generation to the next (Caswell, 2001) =============================================================== This workflow has been created by the Biodiversity Virtual e-Laboratory (BioVeL http://www.biovel.eu/) project. BioVeL is funded by the EU’s Seventh Framework Program, gr...

Created: 2012-11-02 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

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Funded by: BioVeL, EPSRC, JISC, Microsoft

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