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Showing 1566 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Exploration of fishing scenarios (1)

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This workflow must run after the workflow: Resident killer whale-chinook salmon interactions. The interaction workflows generates a PostWorkspace file, this is a zip file and it is an R Workspace that transfers values from the Resident killer whale-chinook salmon interactions (main) workflow to the Exploration of fishing scenario (post-processing) workflow. This workflow merges statistical inference derived from linkages between RKW vital rates (survival probability and fecundity rates) a...

Created: 2014-09-26

Credits: User Maria Paula Balcazar-Vargas User Antonio Velez-Espino User Andres Araujo User Jon Giddy User Francisco Quevedo

Attributions: Workflow Resident killer whale-chinook salmon interactions

Taverna 2
Uploader
3190?size=60x60 Dk Bolette Jurik

Workflow xcorrSound_waveform-compare_alt (1)

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xcorrSound waveform-compare Wav File Comparison. "Alt" version uses the xcorrSound Project debian package installation rather than the scape toolwrapper debian package installation.

Created: 2014-09-30 | Last updated: 2014-09-30

Taverna 2
Uploader
3850?size=60x60 Peter Ittzes
Project Biovel

Workflow Biome-BGC GLUE 1.3 (2)

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Biome-BGC is working with a lots of ‘a priori’ unknown and hard to obtain model parameters. Therefore the parameterization is a critical step of using the model. Parameteres can be estimated using inverse calibration techniques based on measurement data, which means that the model is being calibrated. Measurement data have to be collected with respect to the model in order to compare them. Comparison is based on misfit measure (e.g. a sort of likelihood value), which is the function of the di...

Created: 2014-10-02 | Last updated: 2014-10-09

Credits: User Peter Ittzes User Ferenc HORVATH User Dora Krasser User Zoltan BARCZA User Doborl Network-member BioVeL

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Construct viewparams (1)

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Construct the viewparams parameter to OBIS services

Created: 2014-10-02

Credits: User Alan Williams

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Species Occurrence (1)

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Retrieve the first 100 occurrences of a species in Darwin format

Created: 2014-10-03

Credits: User Alan Williams

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Get weather information (1)

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Get the weather forcast of the day for you city. Info display: wind, visibility, temperature, sky conditions and pressure.

Created: 2014-10-03

Credits: User Alan Williams User Franck Tanoh

Attributions: Workflow Get weather information

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Species chooser (1)

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In your browser, choose between marmots and horseshoe crabs

Created: 2014-10-03

Credits: User Alan Williams

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Increment an integer (1)

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This workflow uses R to increment the input integer

Created: 2014-10-03

Credits: User Alan Williams

Taverna 2
Uploader
Avatar Renzo
Project Biovel

Workflow Microbial Metagenomic Trait Calculation an... (3)

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This workflow calculates the microbial traits of your metagenome and retrieves additional traits data from the Microbial Metagenomic Trait Database http://mb3is.megx.net/mg-traits. The list of traits: - GC content - Variance of GC content - Dinucleotides - Number of rRNA - Codon usage - Amino acid composition - Acidic to basic amino acids ratio - % of Transcriptional factors - % of classified reads - Functional content - Functional diversity - Taxonomic content - Taxonomic diversity As ...

Created: 2014-10-03 | Last updated: 2015-06-12

Credits: User Renzo User Antonio Fernandez-Guerra

Attributions: Workflow Microbial Metagenomic Trait Statistical Analysis Workflow

Taverna 2
Uploader
3194?size=60x60 Hu Ferenc HORVATH
Project Biovel

Workflow Biome-BGC SA 1.3 (1)

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Biome-BGC is a process-based biogeochemical model that can be used to simulate carbon, nitrogen and water fluxes of different terrestrial ecosystems. Two models have been implemented: the Biome-BGC v4.1.1 Max Planck Institute model, and the newly developed Biome-BGC MuSo 3.0 model. Performance, success or failure of these models are highly dependent on parameter settings and variation. Due to the high number of parameters (around 40 and 60 for 4.1.1 MPI and MuSo respectively) and the non-line...

Created: 2014-10-04

Credits: User Ferenc HORVATH User Dora Krasser User Peter Ittzes User Zoltan BARCZA Network-member BioVeL

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow extract_auc (2)

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Extracts the AUC value from a test result XML.

Created: 2014-10-09 | Last updated: 2014-10-13

Credits: Network-member BioVeL

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow extract_roc_points (1)

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Extracts the ROC points from a test result XML.

Created: 2014-10-13 | Last updated: 2014-12-04

Credits: Network-member BioVeL

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow extract_confusion_matrix (1)

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Extracts confusion matrix data from a test result XML.

Created: 2014-10-13 | Last updated: 2014-12-04

Taverna 2
Uploader
30?size=60x60 Nl Marco Roos

Workflow Match concept to HPO profiles (1)

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This workflow matches a query concept to the list of Human Phenotypes. The Human Phenotypes are the subset of the Human Phenotype Ontology for which we have a mapped UMLS concept available and a concept profile. HPO-UMLS mapping: Winnenburg, R., & Bodenreider, O. (2014). Coverage of Phenotypes in Standard Terminologies. In Proceedings of the ISMB’2014 SIG meeting “BioLINK.” Retrieved from http://phenoday2014.bio-lark.org/pdf/5.pdf Concept Profile Database: July 2012

Created: 2014-10-20

Credits: User Marco Roos Network-member BioSemantics

Attributions: Workflow Match concept profiles Workflow Get concept information

Taverna 2
Uploader
30?size=60x60 Nl Marco Roos

Workflow Get HPO concept label and synonym (1)

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This workflow queries bioportal for label and synonyms of Human Phenotype Ontology concepts.Note: this workflow requires a BioPortal API key to work. It can be requested from bioportal.bioontology.org

Created: 2014-10-20 | Last updated: 2014-10-20

Credits: User Rajireturn Network-member BioSemantics

Taverna 2
Uploader
30?size=60x60 Nl Marco Roos

Workflow HPO-UMLS-ConceptID mapping (1)

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Generate HPO-Concept profiles via HPO-UMLS mappings. The result is a list of Concept IDs corresponding to Concept profiles for UMLS concepts that approximate HPO concepts. The output is a table of UMLS-ID, HPO- ID, COncept-ID rows.

Created: 2014-10-20

Credits: User Marco Roos Network-member BioSemantics

Taverna 2
Uploader
Avatar Farida Louacheni

Workflow Workflow submit docking job to the grid (1)

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No description

Created: 2014-10-28

Credits: User Farida Louacheni

Taverna 2
Uploader
4409?size=60x60 respinosa

Workflow Data Mining Recommender (4)

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Scientifi c workflow for the recommender construction 

Created: 2014-10-29 | Last updated: 2018-09-20

Credits: User respinosa

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow convert_points_xml_to_csv (4)

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Converts points in openModeller XML format into CSV format (header: occurrenceID,nameComplete,decimalLongitude,decimalLatitude). Most input/output ports related with presence or absence points expect/return data in openModeller XML format. This component can be used to simply convert such data back to a more human friendly format.

Created: 2014-11-05 | Last updated: 2015-05-11

Credits: Network-member BioVeL

Taverna 2
Uploader
3439?size=60x60 Pt Hélder Silva

Workflow digital-preservation-migration-image-image... (1)

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Converts any ImageMagick supported image format to TIFF

Created: 2014-11-06

Taverna 2
Uploader
3439?size=60x60 Pt Hélder Silva

Workflow digital-preservation-migration-image-gimp-... (1)

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Converts PNG to TIFF

Created: 2014-11-06

Taverna 2
Uploader
3439?size=60x60 Pt Hélder Silva

Workflow digital-preservation-migration-image-graph... (1)

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Converts any GraphicsMagick supported image format to TIFF

Created: 2014-11-06

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow fits - TIFF image characterisation - image... (3)

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Extracts image width, image height, file size, and validity and compression type of a tiff image.

Created: 2014-11-06 | Last updated: 2014-11-06

Credits: User Markus Plangg

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow wc - Comparative File Size (2)

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SCAPE QA Object Component. Measures the file size and comparative file size of two images.

Created: 2014-11-06 | Last updated: 2014-11-06

Credits: User Markus Plangg

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow define_frequently_used_constants (3)

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Defines constants that are frequently used as parameters for ENM Components. When building a new workflow with ENM Components, some constant values will likely be used multiple times as parameters. This component conveniently defines the most frequently used constants so that users can directly connnect them to the corresponding input ports without needing to manually create each constant.

Created: 2014-11-10 | Last updated: 2015-05-11

Credits: Network-member BioVeL

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Funded by: BioVeL, EPSRC, JISC, Microsoft

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