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Showing 1566 results. Use the filters on the left and the search box below to refine the results.

Workflow Weka Regression from XRFF file. (1)

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The here shown workflow splits the given data into a training set and a test set. Afterwards a machine learning model is created by the Weka Regression worker which is evaluated by the Evaluate Regression Results as PDF worker. The resulting sets are stored as XRFF files in the folder determined by the OUT TRAIN XRFF and OUT TEST XRFF input ports. The calcualted machine learning models and the evaluation results are saved in the folder of OUT MODEL input port

Created: 2011-07-21 | Last updated: 2011-07-21

Workflow Substructure filter (1)

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No description

Created: 2011-07-21 | Last updated: 2011-07-21

Workflow QSAR CSV to Weka Regression Dataset (1)

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This workflow converts the molecular descriptor data from a CSV file to a Weka XRFF file. The workflow merges the retention time values from IN IDRT CSV with the molecular descriptor values from IN QSAR CSV to create a valid Weka regression set.

Created: 2011-07-21

Workflow Get Molecular Interactions from a PSICQUIC... (3)

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Check the different iput parameter you could use for this workflow in ... http://code.google.com/p/psicquic/wiki/RestAccess Check available PSICQUIC Services in ... http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS More about PSICQUIC ... http://code.google.com/p/psicquic/

Created: 2011-07-22 | Last updated: 2013-07-10

Credits: User Rafael C. Jimenez

Workflow Genetic Algorithm for Input Component Anal... (1)

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This workflow uses a genetic algorithm to optimize the given molecular descriptor set. Afterwards the workflow splits the data into a training set and test set and evaluates the results which are stored as PDF files.

Created: 2011-07-22

Workflow Get a PSICQUIC REST URL from a PSICQUIC SO... (1)

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Get a PSICQUIC REST URL from a PSICQUIC SOAP URL

Created: 2011-07-22 | Last updated: 2011-07-22

Credits: User Rafael C. Jimenez

Workflow EUADR Relationship Extraction Workflow (1)

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The workflow offers the ability to automatically determine if an ADR and a Drug are co-mentioned in any of the indexed resources. However the actual relationship between a Drug and an ADR can only be determined by referring to the actual resource The co-occurance relationship workflow seeks to automate the search for resources (publications, drug labels) related to ADRs corresponding to a given drug/ adverse event association. To enable this concept profiles for drugs and adverse effects wer...

Created: 2011-07-27 | Last updated: 2012-09-07

Credits: User Bharat Singh

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Workflow EUADR - Literature Analysis (1)

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The aim of the "Literature Analysis" workflow is to automate the search of publications related to ADRs corresponding to a given drug/adverse event association. To do so, we defined an approach based on the MeSH thesaurus, using the subheadings «chemically induced» and «adverse effects» with the “Pharmacological Action” knowledge.

Created: 2011-07-27 | Last updated: 2011-07-27

Credits: User Avillach

Workflow Find common events in HEC tables which use... (5)

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Use only tables which provide lat_hg and long_hg. Inputs: table names of two HEC tables; time interval in which the search is being conducted; delta for time and location to enlarge the search space. Output: VOTable which combines the resultset of the HEC by the common event.

Created: 2011-08-03 | Last updated: 2012-02-03

Credits: User Anja Le Blanc

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Workflow OpenTox Upload and merge data sets (1)

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Uploads 2 data sets to OpenTox, merges them and returns the merged data set.

Created: 2011-08-08 | Last updated: 2011-08-08

Uploader

Workflow OpenTox Learn and evaluate model (1)

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Learns a LoMoGraph model on the TUM servers and evaluates it using 10 fold cross validation.

Created: 2011-08-09

Uploader

Workflow OpenTox Get Id (1)

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No description

Created: 2011-08-09

Workflow XML-RPC example current time (1)

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Using Apache ws-xmlrpc from Beanshell scripts to call time.xmlrpc.com - see http://www.xmlrpc.com/currentTime To use, download the JARs from http://ws.apache.org/xmlrpc/download.html (ie. http://apache.mirror.anlx.net//ws/xmlrpc/apache-xmlrpc-current-bin.zip ) - unzip and put into Taverna's home directory lib/ folder. Right-click on the Beanshell script and check the "Dependencies" tab to check that all JARs have been ticked off (minimum required: ws-common-util.jar, xmlrpc-client.jar and x...

Created: 2011-08-11 | Last updated: 2011-08-11

Credits: User Stian Soiland-Reyes

Workflow Difference: Query - Reference (1)

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Difference bettwen the query list and the reference list. Things that are in the query and not in the reference.

Created: 2011-08-15 | Last updated: 2011-08-15

Credits: User Rafael C. Jimenez

Workflow Split string into string list, new line se... (1)

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Split string into string list using new line as separator. Should work in Linux, Mac and Windows.

Created: 2011-08-15 | Last updated: 2014-02-26

Credits: User Rafael C. Jimenez

Workflow BLAST your sequences against the NucleaRDB (1)

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BLAST your sequences against the NucleaRDB. Input requires a sequence with amino acids only (no fasta format etc)

Created: 2011-08-19 | Last updated: 2011-08-19

Credits: User Bas Vroling

Workflow Find instruments of a special type in a se... (1)

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This workflow takes a type of isnstrument as input and the minimum and maxium coordinates in HCI as input. Cadence for the location service is for defining the 'continues' presence. Output is a VOTable based on the ICS return where two columns are added for the time this instrument has entered and exited the Region of Interest.

Created: 2011-08-24 | Last updated: 2011-08-24

Credits: User Anja Le Blanc

Workflow Find instruments of a special type in a se... (1)

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This workflow takes a type of isnstrument as input and the minimum and maxium coordinates in HCI as input. Cadence for the location service is for defining the 'continues' presence. Output is a VOTable based on the ICS return where two columns are added for the time this instrument has entered and exited the Region of Interest.

Created: 2011-08-24 | Last updated: 2011-08-24

Credits: User Anja Le Blanc

Attributions: Workflow Find instruments of a special type in a section of space described in HCI coordinates

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Workflow Image metadata extraction (1)

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This workflow invokes the gdalinfo service and will list various information about a GDAL supported raster dataset of the image ( GeoTIFF, PNG, JPEG and GIF.).

Created: 2011-08-31 | Last updated: 2011-08-31

Credits: User Harvey

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Workflow TIFF to PNG (1)

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This workflow can convert Image format from TIFF to PNG. This workflow is one of the example for GENESI-DEC ontology.

Created: 2011-08-31 | Last updated: 2011-08-31

Credits: User Harvey

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Workflow Convert GML to SVG (1)

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This workflow can convert the GML (Geography Markup Language) file to SVG image.

Created: 2011-08-31 | Last updated: 2011-08-31

Credits: User Harvey

Uploader

Workflow GT: Sample Sheet Generation (7)

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Creates a sample sheet from a SAMid exported file. User provides a plate number. Before running, make sure the SAMid exported file is in the correct directory under: /gne/research/data/lab-shares/gCell/_gCell/Baseline_Profiling_Cells/Genotyping/Plate_# Results will be stored under this directory: /gne/research/data/bioinfo/gcell/genotype/prd/Plate_#

Created: 2011-08-31 | Last updated: 2011-09-08

Credits: User Chengc

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Workflow GT: Genotyping Comparison Analysis and Clu... (7)

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Creates a genotyping comparison analysis Excel file and heatmap image given final report and gender call input files. User provides either plate numbers, CLID/BIOIDs, cNames, etc. and can choose to either load the data into the database or not. Note that if user chooses to load data into database, script may take longer (few minutes) to run. Before running, make sure the final report and gender call text files are correctly named and that they are in the correct directory under: /gne/researc...

Created: 2011-09-01 | Last updated: 2011-09-10

Credits: User Chengc

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Workflow GT: Database - Master SNP Call Table (1)

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Either load new Master SNP call data into the database (from an Excel file) or export the master SNP data from the database into an Excel file. NOTE: Running this workflow will take a couple of minutes. If loading excel data into database, make sure the file is located in the correct directory: /gne/research/data/lab-shares/gCell/_gCell/Baseline_Profiling_Cells/Genotyping/

Created: 2011-09-10

Credits: User Chengc

Uploader

Workflow Seven day weather by zip code (1)

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Get the seven day weather forcast for your zip code. Info display: wind, visibility, temperature, sky conditions and pressure.  Add zip code values to get weather information.

Created: 2011-09-10 | Last updated: 2011-09-14

Credits: User Wdsnellg

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