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Showing 2916 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Bootstrap of observed census transitions. (3)

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This workflow calculates bootstrap distributions of population growth rates (?), stage vectors, and projection matrix elements by randomly sampling with replacement from a stage-fate data frame of observed transitions. The goal of a demographic analysis is very often to estimate lambda, because lambda is estimated from imperfect data, such estimation are uncertain. Therefore, when the results have policy implications it is important to quantify that uncertainty. Confidence interval is one of ...

Created: 2012-11-05 | Last updated: 2014-07-24

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow CDAW CME movie from date (1)

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generates the url for the input date to visualize CMEs and GOES xray light curve produced by CDAW at GSFC

Created: 2012-11-05

Credits: User David PS

Attributions: Workflow HFC Synoptic map from date

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow HFC Synoptic map from date (1)

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query the HELIO Feature Catalogue, and retrieves the image with all the features catalgued for certain date.

Created: 2012-11-05

Credits: User David PS

Taverna 2
Uploader
3190?size=60x60 Dk Bolette Jurik

Workflow Mp3 To Wav Migrate QA CLI List Test (4)

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Migrates Mp3 files from input List to Wav files and performs QA. The QA steps include File Format Validation, Significant Property Comparison and migrationQA file content comparison (all CLI). As this is a Test workflow, the (very large) Wav files are deleted, and only the QA results and log files are saved for analysis. This workflow matches solution SO4 on the SCAPE opf wiki, see http://wiki.opf-labs.org/display/SP/SO4+Audio+mp3+to+wav+Migration+and+QA+Workflow

Created: 2012-11-05 | Last updated: 2012-11-13

Credits: User Bolette Jurik

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Net reproductive rate (Ro) (2)

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This workflow calculates the net reproductive rate (Ro) that is mean number of offspring by which a newborn individual will be replaced by the end of its life, and thus the rate by which the population increases from one generation to the next (Caswell, 2001) =============================================================== This workflow has been created by the Biodiversity Virtual e-Laboratory (BioVeL http://www.biovel.eu/) project. BioVeL is funded by the EU’s Seventh Framework Program, gr...

Created: 2012-11-02 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Generation time (T) (2)

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The time T required for the population to increase by a factor of Ro (net reproductive rate) e.g.: If Ro (net reproductive rate) = 5.56 and T (generation time) = 8.055 The average plant of the species Gentiana pneumonanthe in Terschelling in the year 1987 replaced itself with almost six new plants and took approximately 8.05 years to do so. ========================================================= This workflow has been created by the Biodiversity Virtual e-Laboratory (BioVeL http://www.bio...

Created: 2012-11-02 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Transient Dynamics. (3)

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This workflow produces plots of the short-term dynamics and convergence to stable stage distribution using stage vector projections. ============================================================ This workflow has been created by the Biodiversity Virtual e-Laboratory (BioVeL http://www.biovel.eu/) project. BioVeL is funded by the EU’s Seventh Framework Program, grant no. 283359. This workflow was created based on Package ‘popbio’ in R. Stubben, C & B. Milligan. 2007. Estimating and Anal...

Created: 2012-11-02 | Last updated: 2014-07-31

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Age specific analysis (3)

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The age specific analysis workflow gives the basic information on age-specific survival, this includes the mean, variance and coefficient of variation (cv) of the time spent in each stage class and the mean and variance of the time to death. Fundamental matrix (N): is the mean of the time spent in each stage class. Variance (var): is the variance in the amount of time spent in each stage class. Coefficient of variation (cv): is the coefficient of variation of the time spent in each class...

Created: 2012-11-02 | Last updated: 2014-07-24

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Eigen analysis (3)

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The Eigen analysis results are a set of demographic statistics: 1) Lambda or dominant eigenvalue: The population will be stable, grow or decrease at a rate given by lambda: eg: ? = 1 (population is stable), ? > 1 (population is growing) and finally ? < 1 (populatiopn is decreasing) . 2) The stable stage distribution: It is the proportion of the number of individuals per stage and it is given by (w). Elasticity and Sensitivity: Sensitivity and elasticity analyses are prospective analyses....

Created: 2012-11-02 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Workflow Matrix Population Model analysis v12 Blob Stage Matrix of Gentiana pneumonanthe 1987-88

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Creation of a stage matrix model from demo... (2)

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This workflow create a stage matrix model based on two years census data of tagged or mapped individuals of an animal or plant population. Each annual census describes for each individual its life stage, reproductive output (estimated number offprings) and whether or not it is a new recruit. The workflow converts this data into a stage matrix model from 1 year to 2 that contains transitions probabilities from each stage to the next. This workflow has been created by the Biodiversity Virtual...

Created: 2012-11-01 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model construction and analysis v20 Blob Demographic data Gentiana pneumonanthe 1987-1988 from Terschelling File.

htm
Uploader
Avatar Ge dhefley

Workflow Measuring Cellular Respiration in Animals (1)

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 This is an incomplete workflow of an experiment designed to measure the cellular respiration of different animals under different conditions.

Created: 2012-10-31

Credits: User dhefley

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Uploader
Avatar Ge dhefley

Workflow Cellular Respiration of Peas (1)

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  Does temperature influence the rate of cellular respiration?

Created: 2012-10-31 | Last updated: 2012-10-31

Credits: User dhefley

Taverna 2
Uploader
Avatar Ie Eoincar

Workflow Extract average Solar wind speed from ACE ... (1)

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It reads the data coming from a MDES (HELIO) query and calculates the average Solar Wind speed. Notice that it just works for ACE as other missions could have the columns in different order.

Created: 2012-10-30

Credits: User Eoincar

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow Solar Wind properties and plot (1)

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Using HELIO-MDES this workflow provides some properties of the solar wind from an input date and a mission and the plot +/-1 day for context.

Created: 2012-10-25

Credits: User David PS

Attributions: Workflow MDES simple execution

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow Back CIR-CME propagation model (1)

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With a observing time at an object and the type of PM that you want to run executes it and provides the plots and the time and longitude where it should be seen the origin of the event.

Created: 2012-10-24

Credits: User David PS User Anja Le Blanc

Attributions: Workflow CME backwards propagation Workflow Co-rotating Interaction Regions backwards propagation

RapidMiner
Uploader
2630?size=60x60 Hr tomS

Workflow Parameter-optimization-SVM-classifier-work... (1)

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Workflow with nested loops for SVM parameter optimization and model XValidation

Created: 2012-10-24

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow When do the Fastest type II CME should be ... (2)

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The fastest CME is found from an interval of time, and propagated to Earth, in two steps, first to obtain the Solar wind speed at Earth and then propagated again with a more reasonable CME speed. The output produces Min-Max ETAs for each object in the heliosphere and the plots of the final propagation model. This Workflow was produced as one of the challenges in the HELIO CDAW-IV hosted at TCD

Created: 2012-10-21 | Last updated: 2013-03-20

Credits: User David PS User Eoincar User Gab User Baptiste Cecconi User Shanem User Jbyrne User Florian Mayer User Natasha User A lynnyk

Attributions: Workflow LASCO_CME_QUERY Workflow LASCO_CME_QUERY Workflow MDES simple execution Workflow timeToTimeRange Workflow Forward CME propagation model (SHEBA) - defined outputs Workflow When did the fastest type II CME happened? Workflow Goes Flare Check WF Workflow 100CME_task1 Workflow Extract average Solar wind speed from ACE data

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow Forward CME propagation model (SHEBA) - de... (1)

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Extract Objects, HitOrMiss, ETAs and plots for a selected run of the SHEBA forward CME.

Created: 2012-10-21

Credits: User David PS

Attributions: Workflow CME backwards propagation

Taverna 2
Uploader
2577?size=60x60 Ie David PS

Workflow When did the fastest type II CME happened? (1)

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Simple query to the HELIO Event Catalogue to extract the start and end time of the fastest CME from the Wind Type II catalogue. Also it extracts the Xray Class from the flare associated to the CME

Created: 2012-10-21

Credits: User David PS User Eoincar

Attributions: Workflow Extract content of columns from VOTables

Taverna 2
Uploader
3885?size=60x60 It Massimo La Rosa

Workflow get_Disease_Id_by_Pathway (1)

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retrieve Disease Id related to a gien pathway in KEGG db

Created: 2012-10-19

Credits: User Massimo La Rosa User Antonino Fiannaca

Taverna 2
Uploader
3885?size=60x60 It Massimo La Rosa

Workflow Retrieve_Pubmed_Publication_by_kegg_pathwa... (1)

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This workflow shows in your browser pubmed articles related to input pathway

Created: 2012-10-18

Credits: User Massimo La Rosa User Antonino Fiannaca

Taverna 2
Uploader
4361?size=60x60 Fr Baptiste Cecconi

Workflow APIS EPN-TAP Query (1)

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Use this workflow to query APIS (Auroral Planetary Imaging and Spectroscopy) using the EPN-TAP protocol.

Created: 2012-10-18

Credits: User Baptiste Cecconi

Taverna 2
Uploader
3562?size=60x60 Fr Bart Lamiroy

Workflow DAE Random Image Selector (1)

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DAE Webservice providing n random images from a given data set. 

Created: 2012-10-16

Credits: User Bart Lamiroy

Taverna 2
Uploader
3562?size=60x60 Fr Bart Lamiroy

Workflow NCC Image Binarization (1)

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Converts color or grayscale image to black-and-white. Winning contribution by the NCI/CADD group at the National Institutes of Health for the ICDAR 2011 Document Analysis Algorithm Contributions in End-to-End Applications Contest.

Created: 2012-10-16

Credits: User Bart Lamiroy

Taverna 2
Uploader
3562?size=60x60 Fr Bart Lamiroy

Workflow NCC Document Layout Segmentation (1)

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Segments a black-and-white input image into text, line drawing and picture images. Contribution by the NCI/CADD group at the National Institutes of Health for the ICDAR 2011 Document Analysis Algorithm Contributions in End-to-End Applications Contest.

Created: 2012-10-16

Credits: User Bart Lamiroy

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Funded by: BioVeL, EPSRC, JISC, Microsoft

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