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Showing 1566 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
4011?size=60x60 Gb Alex Nenadic

Workflow Secure Web service call example (1)

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This is an example of a workflow that contains a call to a secure Web service that runs behind HTTPS and requires user to authenticate. The first thing you can expect to see is a pop up dialog asking if you trust the Web service to be invoked over HTTPS. You can use testuser/testpasswd as username and password for authentication when running the workflow. To see where the security is being configured, right-click the service in the diagram and select "Configure security" from the menu. You m...

Created: 2014-04-03

Credits: User Alex Nenadic

Taverna 2
Uploader
4011?size=60x60 Gb Alex Nenadic

Workflow Simple Python example (1)

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This workflow generates a random number within the range 0 to 100. The generation is done by a python script. The workflow assumes that python is in the path.

Created: 2014-04-03

Credits: User Alex Nenadic

Taverna 2
Uploader
4011?size=60x60 Gb Alex Nenadic

Workflow Spreadsheet Import Example (1)

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Example using the SpreadsheetImport service to import data from an Excel spreadsheet. The workflow imports the file spreadsheet file WaterUse.xlsx and generates a graph from the date. The source data is from http://data.gov.uk/

Created: 2014-04-03

Credits: User Alex Nenadic

Taverna 2
Uploader
4011?size=60x60 Gb Alex Nenadic

Workflow Unix tool service using string replacement (1)

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The tool service outputs a message that greets using the names specified on Greet's input ports.

Created: 2014-04-03

Credits: User Alex Nenadic

Taverna 2
Uploader
1405?size=60x60 At Sven

Workflow ONB Web Archive Fits Characterisation usin... (1)

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Wrapper workflow for workflow 3933 to produce a test series, the nested workflow is executed with a set of "num_files_per_invokation" parameters.

Created: 2014-04-04

Taverna 2
Uploader
Avatar Khalid Belhajjame

Workflow Toy workflow (1)

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This is just a toy workflow

Created: 2014-04-04

Credits: User Khalid Belhajjame

Taverna 2
Uploader
Avatar Zeynep Pehlivan

Workflow Tool for detecting changes in web pages an... (1)

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SCAPE QA Object Component

Created: 2014-04-07

Credits: User Zeynep Pehlivan

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Photohawk AE tiff/png/jpeg (3)

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SCAPE QA Object Component. Compares tiff/png/jpeg images using Photohawk AE.

Created: 2014-04-09 | Last updated: 2014-10-30

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Photohawk equal tiff/png/jpeg (2)

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SCAPE QA Object Component. Compares tiff/png/jpeg images using Photohawk equal.

Created: 2014-04-09 | Last updated: 2014-09-07

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Photohawk MAE tiff/png/jpeg (3)

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SCAPE QA Object Component. Compares tiff/png/jpeg images using Photohawk MAE.

Created: 2014-04-09 | Last updated: 2014-10-30

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Photohawk MSE tiff/png/jpeg (3)

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SCAPE QA Object Component. Compares tiff/png/jpeg images using Photohawk MSE.

Created: 2014-04-09 | Last updated: 2014-10-30

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Photohawk PAE tiff/png/jpeg (5)

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SCAPE QA Object Component. Compares tiff/png/jpeg images using Photohawk PAE.

Created: 2014-04-09 | Last updated: 2014-10-30

Taverna 2
Uploader
Avatar Sixuan Wang

Workflow Workflow of IFC data collection, crowd mod... (3)

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Simulation workflow for crowd modeling in building. could perform CAD data collection, crowd modeling and simulation, results parsing for 3D visualization. This workflow cannot be executed due to local tools dependancies. This workflow is working in process, we will deploy local tools as services and they will be acessable for anyone.

Created: 2014-04-09 | Last updated: 2014-06-24

Taverna 2
Uploader
3655?size=60x60 Nl Magnus Palmblad

Workflow Tutorial_1_start (1)

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This partial workflow is the starting point for Taverna tutorial held at the Leiden University Medical Center on April 17, 2014.

Created: 2014-04-16

Credits: User Magnus Palmblad

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Extract_data_providers (2)

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Changed output port name

Created: 2013-12-01 | Last updated: 2013-12-01

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Extract_positions (2)

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Changed output port name

Created: 2013-12-01 | Last updated: 2013-12-01

Taverna 2
Uploader
4185?size=60x60 Nl Eleni

Workflow Annotate gene list with top ranking concepts (4)

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This workflow annotates a comma separated gene list with a predefined concept set as for example Biological processes or Disease/syndrome. To obtain the particular id for each concept set (e.g. "5" for Biological processes), the workflow listPredefinedConceptSets needs to run first. The output provides us with the top (cutoff) concepts that describe our gene list of interest The workflow is using the anni web services .

Created: 2013-12-03 | Last updated: 2015-04-03

Credits: User Eleni

Taverna 2
Uploader
3366?size=60x60 Gb Norman Morrison

Workflow mrow workflow (1)

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No description

Created: 2013-12-03

Credits: User Norman Morrison

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow get_available_layers (8)

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Retrieves all available environmental layers from the openModeller web service and optionally from the BioSTIF service. In the first case, a single XML is returned according to the openModeller XML Schema, and in the second case a list of XML is returned for each BioSTIF workspace.

Created: 2013-12-06 | Last updated: 2015-03-26

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow select_layers (4)

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Displays an interface to select one or more environmental layers. Returns a list of labels and a list of ids for the selected layers, both lists separated by line feed.

Created: 2013-12-06 | Last updated: 2015-05-11

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow get_available_algorithms (3)

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Retrieves all available algorithms from the openModeller web service, returning an XML.

Created: 2013-12-06 | Last updated: 2014-11-04

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow select_algorithm_and_set_parameters (2)

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Displays an interface to select one of the algorithms and then another interface to set algorithm parameter values. Returns selected algorithm and parameter values as XML.

Created: 2013-12-06 | Last updated: 2015-04-04

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Extract_citations (3)

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Corrected XPath

Created: 2013-12-09 | Last updated: 2013-12-09

Taverna 2
Uploader
1405?size=60x60 At Sven

Workflow ONB Web Archive Fits Characterisation usin... (2)

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Hadoop based workflow for applying FITS on the files contained in ARC web archive container files and ingest the FITS output in a MongoDB using C3PO. Dependencies: - Spacip (https://github.com/shsdev/spacip) - Tomar (https://github.com/openplanets/tomar) - C3PO (https://github.com/peshkira/c3po) Parameters: - hdfs_input_path: Path to a directory which contains textfile(s) with absolute HDFS paths to ARC files - num_files_per_invokation: Number of items to be processed per invokation - fits...

Created: 2013-12-09 | Last updated: 2013-12-10

Credits: User Sven

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow select_or_create_mask (7)

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Displays an interface so that users can select or create a mask.

Created: 2013-12-10 | Last updated: 2015-04-04

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow create_model (10)

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Creates a model based on the specified parameters.

Created: 2013-12-10 | Last updated: 2014-12-04

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow test_model (11)

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Tests a model based on the specified parameters (confusion matrix and/or ROC curve).

Created: 2013-12-10 | Last updated: 2014-12-04

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow evaluate_model (9)

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Evaluates a model, returning model values for a given set of points and layers.

Created: 2013-12-10 | Last updated: 2014-12-04

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow JSTAsync2 (7)

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slow down loops to 60 sec

Created: 2013-12-11 | Last updated: 2014-06-19

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow JSTAsync1 (6)

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slow down job retrival to one every 60 sec

Created: 2013-12-11 | Last updated: 2014-06-19

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow JSTWebDav3Input (3)

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Some Broken

Created: 2013-12-11 | Last updated: 2013-12-17

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow SelectingEvolutionaryModelWithPartFinder (19)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-12-11 | Last updated: 2014-12-01

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow MrBayes (10)

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using slow paced JSTasync 1

Created: 2013-12-11 | Last updated: 2014-06-19

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow ConVergenceTreeDiagnosticGeoKS (15)

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robust interaction

Created: 2013-12-11 | Last updated: 2014-11-27

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow ConsensusTree (15)

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robust interaction

Created: 2013-12-11 | Last updated: 2014-11-27

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow TreeVisualizationItol (11)

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robust interaction

Created: 2013-12-11 | Last updated: 2014-11-27

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow MrBayesPPtest (13)

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robust connection

Created: 2013-12-11 | Last updated: 2014-11-27

Taverna 2
Uploader
Avatar Alastai...

Workflow raw2nexus taverna 2 workflow using pt-mapr... (5)

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No description

Created: 2013-12-12 | Last updated: 2014-06-20

Credits: User Alastairduncan

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Launch_GUI (3)

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No description

Created: 2013-12-13 | Last updated: 2014-04-09

Taverna 2
Uploader
Avatar De Robert Kulawik
Project Biovel

Workflow BioVeL ESW DIFF Basic (4)

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this workflow is a basic version of the ESW DIFF, it computes an raster diff from GeoTIFF or ERDASImagine files and some statistics about the files and their difference without to display country borders and occurence points. For more about the input and output files see the BioVeL PSW workflow description: http://www.myexperiment.org/workflows/3647.html

Created: 2013-12-17 | Last updated: 2014-08-22

Credits: User Robert Kulawik

Attributions: Workflow BioVeL ESW DIFF - ENM Statistical Workflow with raster difference computation

Taverna 2
Uploader
Avatar Sixuan Wang

Workflow Workflow of IFC data collection, crowd mod... (3)

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Simulation workflow for crowd modeling in building. It combines all the components needed for crowd simulation (CAD/BIM data collection, crowd modeling, crowd simulation and 3D visualization). This version cannot be executed as is due to local tools dependancies (the components in yellow). The lattest version is available in http://www.myexperiment.org/workflows/4247.html.

Created: 2013-12-18 | Last updated: 2014-06-24

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow project_model (9)

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Projects a model based on the specified parameters.

Created: 2013-12-24 | Last updated: 2014-12-04

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow biostif_upload_raster (4)

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Uploads a raster from a given URL to a BioSTIF server, from where it can be displayed through the BioSTIF web interface.

Created: 2013-12-24 | Last updated: 2015-05-11

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow select_matching_layers (5)

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Displays an interface where users can select matching layers (same variables) based on the labels of previously selected layers. This is typically needed when projecting a model into a different scenario, where the same variables selected for model creation need to be used on a different chronologic or geographic context. The interaction page may optionally include a label field.

Created: 2013-12-24 | Last updated: 2015-05-11

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Download images for gene (3)

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This workflow downloads the first few images corresponding to experiments for the specified gene

Created: 2014-07-13 | Last updated: 2014-07-15

Credits: User Alan Williams

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow Experiments for gene (2)

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This workflow uses the Allen Brain REST API to fetch the experiements corresponding to a named gene

Created: 2014-07-15 | Last updated: 2014-07-15

Credits: User Alan Williams

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow EBI_InterproScan (1)

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Perform EBI Interproscan

Created: 2014-07-16 | Last updated: 2014-07-16

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Keyfitz delta (1)

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The Keyfit delta Workflow provides an environment to calculate the Keyfit delta value. Keyfitz’s delta is a measure of the distance between any two probability vectors (Keyfitz 1968). In this case is a measure of the distance between n (Observed Stage Distribution) and w (Stable Stage Distribution). The maximum value is 1 and the minimum value is 0 (when the vectors are identical). ============================================================ This workflow has been created by the Biodiversit...

Created: 2014-07-23

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model analysis v12 Workflow Matrix Population Model construction and analysis v20

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Cohen’s cumulative distance (1)

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The Cohen’s cumulative distance Workflow provides an environment to calculate the Cohen’s cumulative distance. The Cohen’s cumulative distance measures the difference between observed and expected vectors along the matrix path that the population would take to reach the expected population vector. It is a function of both the observed stage distribution (n0) and the structure of the matrix (A) (Williams et al 2011). Cohen’s cumulative distance will not work for reducible matrices or imprimiti...

Created: 2014-07-23

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model analysis v12 Workflow Matrix Population Model construction and analysis v20

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Simulate stochastic growth from a sequence... (1)

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The Simulate stochastic growth from a sequence of matrices Workflow provides an environment to simulate stochastic growth by projection using whole matrix selection techniques in an independently and identically distributed (iid) environment from a set of 2 or more projection matrices. This workflow is based on the popbio package (script: stoch.projection - Simulate stochastic growth from a sequence of matrices, Stubben, Milligan and Nantel, 2013) based on the The MATLAB code in Box 7.3 (Mo...

Created: 2014-07-30 | Last updated: 2014-08-14

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Francisco Quevedo User Gerard Oostermeijer

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Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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