Workflows

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Showing 1566 results. Use the filters on the left and the search box below to refine the results.

Workflow Image annotation (2)

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No description

Created: 2014-05-07 | Last updated: 2014-05-07

Credits: User Ondrej Klima

Workflow getDataPointValue by SINP (2)

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Workflow for Taverna based on the IMPEx-FP7 method getDataPointValue. This method is used to compute values of various physical quantitites (e.g. density, magnetic field strengths etc.) for a given simulation run at a user given set of 3D points.

Created: 2014-05-07 | Last updated: 2014-05-20

Credits: User Manuel Scherf

Workflow getDataPointValueFixedTime by SINP (3)

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Workflow for Taverna based on the IMPEx-FP7 method getDataPointValueFixedTime. The method can be used to return the magnetic field (calculated by SINP paraboloid magnetic field model) in given points inside the planetary magnetosphere and at a fixed time for each point.

Created: 2014-05-07 | Last updated: 2014-05-19

Credits: User Manuel Scherf

Workflow Visualize PAV provenance as SVG (1)

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VoID descriptions are fetched as Turtle, cleaned up to be valid OWL ontology and include useful labels, processed through the OWL reasoner Pellet; this adds inferred PROV statements to the RDF, which is then fed to the PROV Toolbox, generating an SVG visualization of the provenance. Note that this workflow downloads CWM, Pellet and ProvToolbox on demand, and uses UNIX command line tools like wget and md5 which are unlikely to work in Windows. This workflow has been tested on Ubuntu 12.10 wit...

Created: 2014-05-08

Credits: User Katy Wolstencroft User Aleksandra Pawlik

Workflow Fetch Abstracts (1)

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Example how to fetch abstracts using a component that performs SQL queries based on a database properties string.

Created: 2014-05-08

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Workflow Visualize PAV provenance as SVG (1)

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VoID descriptions are fetched as Turtle, cleaned up to be valid OWL ontology and include useful labels, processed through the OWL reasoner Pellet; this adds inferred PROV statements to the RDF, which is then fed to the PROV Toolbox, generating an SVG visualization of the provenance. Note that this workflow downloads CWM, Pellet and ProvToolbox on demand, and uses UNIX command line tools like wget and md5 which are unlikely to work in Windows. This workflow has been tested on Ubuntu 12.10 wit...

Created: 2014-05-20

Credits: User Peter Li

Workflow CPGP Peregrine Get Abstracts Create tables (3)

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Requirements: Have MySQL installed with a database called mydb or please create one. Have a mysql connector file. This can be downloaded from mysql.com. Rename the downloaded file to mysql-connector-java.jar and place it in the the local lib file of Taverna as written on the dependencies tab. Choose this dependency by rightclicking a beanshell script and selecting it for the whole workflow as system classloader. Download the Peregrine SKOS CLI from: https://trac.nbic.nl/biosemantics/downlo...

Created: 2014-05-27 | Last updated: 2014-06-30

Credits: User Amrish Mahes

Workflow CPGP 2x2 Contingency table (3)

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Requirements: Have MySQL installed with a database called mydb or please create one. Have a mysql connector file. This can be downloaded from mysql.com. Rename the downloaded file to mysql-connector-java.jar and place it in the the local lib file of Taverna as written on the dependencies tab. Choose this dependency by rightclicking a beanshell script and selecting it for the whole workflow as system classloader. Download the Peregrine SKOS CLI from: https://trac.nbic.nl/biosemantics/downlo...

Created: 2014-05-27 | Last updated: 2014-06-30

Credits: User Amrish Mahes

Workflow Concept profile calculation CPGP (2)

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Requirements: Have MySQL installed with a database called mydb or please create one. Have a mysql connector file. This can be downloaded from mysql.com. Rename the downloaded file to mysql-connector-java.jar and place it in the the local lib file of Taverna as written on the dependencies tab. Choose this dependency by rightclicking a beanshell script and selecting it for the whole workflow as system classloader. Download the Peregrine SKOS CLI from: https://trac.nbic.nl/biosemantics/downlo...

Created: 2014-05-27 | Last updated: 2014-06-30

Credits: User Amrish Mahes

Workflow CPGP Concept matching calculation with inn... (2)

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Requirements: Have MySQL installed with a database called mydb or please create one. Have a mysql connector file. This can be downloaded from mysql.com. Rename the downloaded file to mysql-connector-java.jar and place it in the the local lib file of Taverna as written on the dependencies tab. Choose this dependency by rightclicking a beanshell script and selecting it for the whole workflow as system classloader. Download the Peregrine SKOS CLI from: https://trac.nbic.nl/biosemantics/downlo...

Created: 2014-05-27 | Last updated: 2014-06-30

Credits: User Amrish Mahes

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