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Taverna 2
Uploader
Avatar Amrish Mahes

Workflow CPGP Summary table (2)

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Requirements: Have MySQL installed with a database called mydb or please create one. Have a mysql connector file. This can be downloaded from mysql.com. Rename the downloaded file to mysql-connector-java.jar and place it in the the local lib file of Taverna as written on the dependencies tab. Choose this dependency by rightclicking a beanshell script and selecting it for the whole workflow as system classloader. Download the Peregrine SKOS CLI from: https://trac.nbic.nl/biosemantics/downlo...

Created: 2014-05-27 | Last updated: 2014-06-30

Credits: User Amrish Mahes

Taverna 2
Uploader
Avatar Ondrej Klima

Workflow template (1)

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No description

Created: 2014-05-28

Credits: User Ondrej Klima

Taverna 2
Uploader
Avatar Ondrej Klima

Workflow 3Drec (1)

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No description

Created: 2014-05-28

Credits: User Ondrej Klima

Taverna 2
Uploader
Avatar Ondrej Klima

Workflow Anot (1)

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No description

Created: 2014-05-28

Credits: User Ondrej Klima

Taverna 2
Uploader
3505?size=60x60 At Markus Plangg

Workflow Imagemagick identify - image size (1)

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Extracts the image size using imagemagick identify

Created: 2014-06-16

Credits: User Markus Plangg

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario

Workflow RetrivingJob1 (1)

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Get Retrieve result of a job for which you possess the ID

Created: 2014-06-17 | Last updated: 2014-06-24

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Parametric Bootstrap or Resample a project... (3)

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The Parametric Bootstrap or Resample a projection matrix Workflow provides an environment to resample a projection matrix using a multinomial distribution for transitions and a log normal distribution for fertilities (Stubben, Milligan, and Nantel. 2011). The resample is based on number of plants surveyed. The projection matrix A is first split into separate transition and fertility matrices. Dead fates are added to the transition matrix and the columns are then sampled from a Multinomial dis...

Created: 2014-06-18 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model analysis v12

Taverna 2
Uploader
1217?size=60x60 Gb Alan Williams

Workflow split_by_newline (1)

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Splits a string into a list of strings. The initial string must use newline as a separator

Created: 2014-06-24 | Last updated: 2014-10-02

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Damping ratio (2)

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The Damping ratio Workflow provides an environment to calculate the damping ratio of several matrices and plot them. The damping ratio can be considered as a measure of the intrinsic resilience of the population, describing how quickly transient dynamics decay following disturbance or perturbation regardless of population structure, the larger the p, the quicker the population converges. ============================================================= This workflow requires an instance of Rse...

Created: 2014-06-25 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Gerard Oostermeijer

Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Stages vectors plots, Survival and Growth ... (2)

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The Stages vectors plots, Survival and Growth rate curves Workflow provides an environment to perform several analyses on a series of stage-matrices: - Survival values calculations per stage per year and its respective plot; - Growth rates (lambda) calculations per year and its respective plot; - Stage Vectors calculations and their respective plots. ====================================================== This workflow requires an instance of Rserve on localhost This workflow has been creat...

Created: 2014-07-02 | Last updated: 2014-08-29

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Gerard Oostermeijer

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Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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