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Showing 31 results. Use the filters on the left and the search box below to refine the results.
RapidMiner
Uploader
1831?size=60x60 Pl Lawrynka

Workflow Semantic clustering (with alpha-clustering... (1)

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The workflow uses RapidMiner extension named RMonto (http://semantic.cs.put.poznan.pl/RMonto/) to perform clustering of SPARQL query results based on chosen semantic similarity measure. The measure used in this particualr workflow is a kernel that exploits membership of clustered individuals to OWL classes from a background ontology ("Epistemic" kernel from [1]). Since the semantics of the backgound ontology is used in this way, we use the name "semantic clustering". This ...

Created: 2012-01-29 | Last updated: 2012-01-30

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Infererence: Input R... (3)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2015-06-12

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Taverna 1
Uploader
9?size=60x60 Gb Stian Soiland-Reyes

Workflow Staged iteration strategy (1)

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Consider two lists A and B, of equal size 3. A[1] corresponds to B[1], A[2] to B[2], etc, for instance A are image scans from 2007 and B from 2008, and the index indicates the patient number. A = [a0, a1, a2] B = [b0, b1, b2] There's then two lists of possible parameters P and Q, of different lengths, P has 2 and Q has 4 items. P = [p0, p1] Q = [q0, q1, q2, q3] Each of the A items should be processed in ap using each of the P parameters, and each of the B items ...

Created: 2008-05-07 | Last updated: 2008-05-07

Credits: User Stian Soiland-Reyes

BioExtract Server
Uploader
484?size=60x60 Us Carol Lushbough

Workflow Liliopsida Protein Alignment (6)

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This workflow retrieves Liliopsida chloroplast petb gene sequences from NCBI Nucleotide, removes duplicate sequences and saves the results at BioExtract Server. These results are then converted into GenBank format and fed into Fetch Translation, which removes the translation from the CDS coding region. Translations are then used to build a multiple alignment using ClustalW.

Created: 2010-01-13 | Last updated: 2010-11-17

Credits: User Carol Lushbough

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Inference: Select Mo... (4)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-07-04

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Infererence: Evaluat... (7)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2015-06-12

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Bayesian Phylogenetic Inference: Select Mo... (3)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-07-04

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Evaluate MrBayes Run on convergence, model... (1)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2014-07-04

Credits: User Saverio Vicario

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Select Model (12)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-06-13

Credits: User Saverio Vicario User Bachirb User Giacinto Donvito

Taverna 2
Uploader
3375?size=60x60 It Saverio Vicario
Project Biovel

Workflow Input Ready (8)

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BioVeL – Biodiversity Virtual e-Laboratory Workflow Documentation Name:Perform Short Bayesian Phylogenetic Inference Capacities Programme of Framework 7: EC e-Infrastructure Programme – e-Science Environments - INFRA-2011-1.2.1 Grant Agreement No: 283359 Project Co-ordinator: Mr Alex Hardisty Project Homepage: [http://www.biovel.eu][1] [1]: http://www.biovel.eu ## 1 Description The Pack contain 3 workflows that perform and validate bayesian phylogenetic i...

Created: 2013-02-20 | Last updated: 2014-04-13

Credits: User Saverio Vicario User Giacinto Donvito User Bachirb

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