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Showing 1566 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
Avatar De Robert Kulawik
Project Biovel

Workflow BioVeL ESW DIFF - ENM Statistical Workflow... (16)

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The ENM Statistical Difference Workflow (ESW DIFF) allows the computation of the extent and intensity of change in species potential distribution through computation of the differences between two raster layers using the R statistical environment (R Core Team 2013). The difference file is computed from two input files (in this case present projection and 2050 projection) coming from the Ecological Niche Modelling (ENM) Workflow (http://www.myexperiment.org/workflows/3355). The difference bet...

Created: 2013-07-08 | Last updated: 2016-06-22

Credits: User Robert Kulawik

Taverna 2
Uploader
3689?size=60x60 Es Julian Garrido

Workflow Find asteroids in images from CAHA observa... (1)

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It analyzes images from CAFOS instrument in Calar Alto Observatory. It uses SkyBot catalog in order to identify objects in the Solar System. It includes a double check to avoid objets that are not asteroids (comparing with USNO and 2MASS catalogs). The result is a VOTable of asteroids

Created: 2013-07-17

Credits: User Julian Garrido

Attributions:

Taverna 2
Uploader
4056?size=60x60 Nl Sander van boom

Workflow wf4ever_PDF2TXT2Solr_Database (1)

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This workflow extracts the text of a .pdf file and stores it in a .txt file. Then it stores the .txt file in a Solr database.

Created: 2013-07-24

Taverna 2
Uploader
4056?size=60x60 Nl Sander van boom

Workflow wf4ever_document_extraction_and_storage (1)

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The workflow uses parts of the existing BioAid workflow by Marco Roos (http://www.myexperiment.org/workflows/74.html) The workflow stores found articles in a Solr database. Make sure that Solr is running in the correct directory (stored in the Solr_directory value).

Created: 2013-07-24 | Last updated: 2013-08-29

Taverna 2
Uploader
4056?size=60x60 Nl Sander van boom

Workflow PubMed Search and Solr storage (5)

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Based on the work of Fisher: This workflow takes in a search term, are passed to the eSearch function and searched for in PubMed. I extended by removing outputs and text extraction and addded an automatic Solr storage process using a post.jar, specified by the user. Before running this workflow, make sure that a solr server is up and running and the variable attached to the SolrImport process contains the correct path. Dependencies: - Solr

Created: 2013-07-25 | Last updated: 2013-08-26

Credits: User Sander van boom

Attributions: Workflow PubMed Search

Taverna 2
Uploader
4054?size=60x60 Sirisha Hesketh

Workflow Query EVS by chromosomal position (1)

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The workflow takes a list of chromosomal positions (in the format chr:pos e.g. 2:139574) and returns a selection of data in the Exome Variant Server (http://evs.gs.washington.edu/EVS/).

Created: 2013-07-26 | Last updated: 2013-07-26

Credits: User Sirisha Hesketh

Taverna 2
Uploader
4057?size=60x60 Es Juandesant

Workflow CSV to VOTable importer (2)

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This module provides a VOTable representation of the CSV file being pointed by the csv_file_path, either as a POSIX local file path, or a URL.

Created: 2013-07-29 | Last updated: 2013-07-29

Credits: User Juandesant Network-member AMIGA Network-member Wf4Ever

Taverna 2
Uploader
Avatar De Sonja Holl

Workflow ENM Maxent workflow used for optimization (1)

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This workflow was used for the optimization of the Maxent algorithm from the openModeller toolbox (http://openmodeller.sourceforge.net/). The workflow uses 10-fold cross-validation and then calculates the average AUC, which can be used as fitness value during parameter optimization.

Created: 2013-08-09 | Last updated: 2013-09-04

Credits: User Sonja Holl User Renato De Giovanni

Taverna 2
Uploader
Avatar De Sonja Holl

Workflow ENM SVM workflow used for optimization (1)

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This workflow was used for the optimization of the SVM algorithm from the openModeller toolbox (http://openmodeller.sourceforge.net). The workflow uses 10-fold cross-validation and then calculates the average AUC, which can be used as fitness value during parameter optimization.

Created: 2013-08-09 | Last updated: 2013-09-04

Credits: User Sonja Holl User Renato De Giovanni

Taverna 2
Uploader
3194?size=60x60 Hu Ferenc HORVATH
Project Biovel

Workflow Biome-BGC ESI version 1.4.1 (3)

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Biome-BGC is a process-based biogeochemical model that can be used to simulate carbon, nitrogen and water fluxes of different terrestrial ecosystems. The model can help us to quantify a broad range of ecosystem service indicators. These newly developed measures include: annual wood increment, yearly production of grasslands or croplands, total average carbon stock, annual evapotranspiration, damping of ecosystem daily water outflow, living and dead biomass protecting the soil against erosion,...

Created: 2013-08-12 | Last updated: 2014-10-04

Credits: User Ferenc HORVATH User Dora Krasser User Peter Ittzes Network-member BioVeL

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Funded by: BioVeL, EPSRC, JISC, Microsoft

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