Workflows

Retention Time Prediction with X!Tandem (1)

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This workflow identifies peptides from tandem mass spectra using X!Tandem as in a standard installation of the Trans-Proteomic Pipeline (TPP, version 4.6, but earlier versions should also work). The peptide-spectrum matches are validates using PeptideProphet (also from a standard installation of TPP) and peptides with at least a probability 0.95 are used to train a linear retention time predictor (Palmblad et al., 2002), whereby retention coefficients are also derived. These indirectly provid...

Created: 2012-09-03 | Last updated: 2012-09-03

Credits: Magnus Palmblad Yassene Eleni

Attributions: rt3.c

Associate Active Regions and Filaments to ... (1)

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This workflow is querying the HEC for the fastest 100 CME of a given list (input parameter); it calculates the latitude from the postion angle; last step is to query the HFC for Active Regions and Filaments for the given time where the bounding box of the feature contains the longitude (feature must be on the correct side of the Sun.) Inputs: HEC list name (must contain fields: v, time_start, pa_width, pa) Outputs: v, time_start, pa_width, pa of the 100 fastest CME, VOTables for associated A...

Created: 2012-09-03

Credits: Anja Le Blanc

READ_MULTI_FASTA_FILE (1)

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Read multi fasta file and split into a list of fasta sequences

Created: 2012-09-04 | Last updated: 2012-09-04

Credits: Mcasfrox

[untitled] (1)

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complete part one of assignment

Created: 2012-09-05 | Last updated: 2012-09-05

Credits: Mcasfrox

SNP Workflow (1)

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This workflow extracts information about the position of SNPs and the genes they are associated with

Created: 2012-09-05

Credits: Aishualex

SNP Workflow (1)

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This workflow extracts information about the position of SNPs and the genes they are associated with

Created: 2012-09-05

Credits: Vishalkpp

LASCO_CME_QUERY (1)

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This workflows queries the LASCO CME list and returns a VOTable with the following fields pa, pa_width, v_final and v_diff which is abs(v_init-v_final)/2

Created: 2012-09-05

Credits: Gab Eoincar Anja Le Blanc

Get SecchiRH composites images (1)

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 This workflow extracts the composite image from the http://secchirh.obspm.fr survey page.

Created: 2012-09-06 | Last updated: 2012-09-06

Credits: Baptiste Cecconi

timeToTimeRange (1)

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Created: 2012-09-06

Goes Flare Check WF (3)

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Created: 2012-09-06 | Last updated: 2012-09-06

Credits: Baptiste Cecconi HELIO

Attributions: Extract content of columns from VOTables