Workflows

GET statuses/home_timeline | Twitter (1)

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Returns a collection of the most recent tweets and retweets posted by the authenticating user and the users they follow. Uses the OAuth plugin for Taverna Workbench.

Created: 2013-01-22

Credits: Mark Borkum

Migration ffmpeg audio to wav pcm_s32le (1)

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Converts audio to wav using ffmpeg with codec pcm_s32le

Created: 2013-01-24

Credits: Markus Plangg

Author Publications and Citations by Year ... (1)

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This workflow demonstrates how to connect to and use Europe PMC (http://europepmc.org/RestfulWebService) to count the number of publications and citations per year for one author. Two Web service calls are made. First, we searchPublications to retrieve the bibliographic records for all published work of a single author. Then, we getCitations to extract the year of all articles citing the work of this author. The pubYear fields is extracted from the raw Web service results and fed to an Rshel...

Created: 2015-12-04

Credits: Magnus Palmblad

Trans-proteomic-pipeline like ('TTPish') w... (2)

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Created: 2015-12-10 | Last updated: 2016-09-29

Credits: Robert Winkler

TTPish workflow for MASSyPup64 with text s... (1)

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This proteomics workflow performs a comet search and subsequently a validation of the results with PeptideProphet/Protein Prophet. Results are exported in various formats, to facilitate the downstream evaluation in other programs and the sharing of data (EXCEL, csv, mzIdentML).Contrary to a standard Trans-Proteomic-Pipeline (TPP) installation, the workflow can be to mass spectrometry data in whatever localization (i.e. the files do not have to be uploaded/ copied to a special directory).The w...

Created: 2015-12-10

Credits: Robert Winkler

Get similar phenotypes for a disease and a... (1)

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This workflow retrieves the similar phenotypes between a disease and a gene based on the Monarch services at http://monarchinitiative.org/page/services. Phenotype similarity is calculated based on OwlSim, see http://owlsim.org.

Created: 2016-02-22

Credits: Kristina Hettne

Get targets for compound (1)

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This workflow retrieves single protein targets for a compound from open PHACTS.

Created: 2016-02-22

Credits: Kristina Hettne Eelke van der Horst Aylin Metzner

Hello abcd (1)

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Example of using the same inserted nested workflow twice, iterating over it twice, which should mean 4 distinct calls to the inner "concatenate" process. This workflow is mainly useful for provenance testing purposes.

Created: 2016-03-15

Credits: Stian Soiland-Reyes

Extract taverna server run id and pass to ... (1)

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Created: 2016-04-21

Credits: Stian Soiland-Reyes Alan Williams

ASTM D0427-04 - Preliminary Workflow (1)

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ASTM D0427-04: Standard Test Method for Shrinkage Factors of Soils by the Mercury MethodThis a preliminary version of a ASTM D0427 Workflow. This seems like a complex workflow but it does not. A lot of services is because I'm using a basic calculator web service to do simple a math calculations (http://www.dneonline.com/calculator.asmx) This simple web service calc use only two operands to do calc in four basic operations (add, divide, multiply and substract). So it's needed intermedi...

Created: 2016-04-25

Credits: Juan Felipe Muñoz Fernández