myExperiment - Workflows

« Previous 1 … 77 78 79 80 81 … 157 Next »

Results per page:

Sort by:

Showing 1566 results. Use the filters on the left and the search box below to refine the results.

Taverna 2

Uploader

Pablo Martin

Taverna wf vs compss wf (1)

Download

No description

Created: 2015-03-24

Credits: Pablo Martin

Taverna 2

Uploader

Eleni

Explain score between two concepts (1)

Download

Purpose of workflow: This workflow takes two ids as input and returns the top ranking "B" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the percentage...

Created: 2015-04-03

Credits: Eleni BioSemantics

Taverna 2

Uploader

Eleni

List Concept Sets (1)

Download

Pupose: The workflow returns a list of all Concept Set IDs currently available in the database. The Concept Sets have an hierarchical structure that can be inferred by referring to the parent Concept Set ID.

Created: 2015-04-03

Credits: Eleni BioSemantics

Taverna 2

Uploader

Eleni

Prioritize gene list (1)

Download

This workflow prioritizes a gene list according to its association with the 'concept_id'. In our example here we are prioritizing a gene list to obtain genes that are more closely associated to huntingtin, the cause of huntington's disease

Created: 2015-04-03

Credits: Eleni BioSemantics

Taverna 2

Uploader

Eleni

Create nanopublications (1)

Download

This workflow creates nanopublications for a gene list that is associated to Huntington's Disease

Created: 2015-04-03

Credits: Eleni BioSemantics

Attributions: create nanopublications converter_nanopublications

Taverna 2

Uploader

Aurora Cain

All-vs-All blastP commands (1)

Download

Creates all the necessary command-line commands to execute all-vs-all blastP from the given FASTA files. Includes making the necessary database. Does not execute the commands. For OSX and UNIX/Linux only (due to path separator).

Created: 2015-04-17

Credits: Aurora Cain

Taverna 2

Uploader

Kristina Hettne

Prioritize gene list for the Cure game (1)

Download

This workflow prioritizes a gene list according to its association with the 'concept_id'. Here we are prioritizing a gene list against breast cancer, in order to try to beat Barney in the game The Cure (http://genegames.org/cure/). Note: Before running this workflow the gene names supplied in the game first needs to be mapped to Entrez gene identifiers. This can be done using either this workflow http://www.myexperiment.org/workflows/3722 or a by performing a search in the NCBI Entrez gene d...

Created: 2015-04-29

Credits: Kristina Hettne Eleni

Attributions: Prioritize gene list

Taverna 2

Uploader

Magnus Palmblad

compare_pubmed_results_geographically (1)

Download

This workflow analyzes the scientific output, as documented by PubMed, geographically. The workflow takes as input the PubMed data in XML and the ISO 3166-1 and ISO 3166-3 country lists. The XML file can contain any subset from a specific PubMed search. The XPath components extract author affiliations, and feed these to a series of Beanshell components that match these with countries in the ISO standard. This data is then fed to an Rshell using the rworldmap R package to map the affiliation ...