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Taverna 2
Uploader
Avatar Brayan S. Zapata-Impatá

Workflow recommenderSystem (1)

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Complementary workflow for the modelBuild. It can read the trained model parameters in order to classify samples in another dataset.

Created: 2017-01-20 | Last updated: 2017-01-20

Taverna 2
Uploader
3655?size=60x60 Nl Magnus Palmblad

Workflow profilePublications_over_time (1)

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This workflow takes a list of arbitrary Europe PMC search queries and generates the corresponding profiles of the number of matching publications per publication year.

Created: 2017-04-19

Credits: User Magnus Palmblad

Taverna 2
Uploader
3655?size=60x60 Nl Magnus Palmblad

Workflow searchPublications_and_MapAffil (1)

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This is a workflow for spatiotemporal analysis of literature indexed in PubMed. The workflow takes an arbitrary Europe PMC search query, calls the Europe PMC Web service searchPublications and extracts the publication year and PubMed ID from the results. The first author affiliation is then geoparsed by the MapAffil Web server to get latitude and longitudes. The coordinates are then concatenated together with the publication year, to produce a single list of publication years, latitudes and ...

Created: 2017-04-19

Credits: User Magnus Palmblad

Taverna 2
Uploader
Avatar De Christian S.

Workflow Color auto balancing (1)

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Color auto balancing of RGB image

Created: 2017-05-02

Credits: User Christian S.

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow ENM resolution mix - multiple runs version (10)

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Multiple runs version of the workflow for comparing results of two kinds of ecological niche models: one using only low resolution layers and the other using a random mix of low and high resolution layers. Users select the study region and the environmental variables considered to be the main drivers of a virtual species niche. The workflow is all based on the ENM components, which use the openModeller Web Service (OMWS). After getting initial parameters from the user, the workflow generates ...

Created: 2014-11-13 | Last updated: 2015-05-12

Credits: User Renato De Giovanni Network-member BioVeL

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow ENM resolution mix - single run version (6)

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Single run version of the workflow for comparing results of two kinds of ecological niche models: one using only low resolution layers and the other using a random mix of low and high resolution layers. Users select the study region and the environmental variables considered to be the main drivers of a virtual species niche. The workflow is all based on the ENM components, which use the openModeller Web Service (OMWS). After getting initial parameters from the user, the workflow generates a r...

Created: 2014-11-18 | Last updated: 2015-04-04

Credits: User Renato De Giovanni Network-member BioVeL

Taverna 2
Uploader
4308?size=60x60 Th Kasikrit Damkliang

Workflow H1-2-H4-SLEEPDEMO (1)

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H1-2-H4-SLEEPDEMO

Created: 2017-09-11

Credits: User Kasikrit Damkliang

Taverna 2
Uploader
4308?size=60x60 Th Kasikrit Damkliang

Workflow 8_nested_workflows (1)

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8_nested_workflows

Created: 2017-09-11

Credits: User Kasikrit Damkliang

Taverna 2
Uploader
Avatar Johnathan Melo Neto

Workflow WSDL Calculator (1)

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Utiliza uma calculadora com métodos disponíveis via WSDL para somar dois números.

Created: 2017-10-10

Credits: User Johnathan Melo Neto

Taverna 2
Uploader
565?size=60x60 alabarga

Workflow Variant Annotation with VEP (Variant Effec... (1)

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Here, from a list of g.vcf files, we execute GenotypeGVCFs command line GenotypeGVCFs perform joint genotyping on gVCF files produced by HaplotypeCaller Variant Effect Predictor http://www.ensembl.org/info/docs/tools/vep/script/index.html The VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

Created: 2017-10-19

Credits: User alabarga

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Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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