myExperiment - Content

Taverna 2

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Microbial Metagenomic Trait Statistical An... (9)

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This workflow retrieves the following microbial metagenomic traits from the Microbial Metagenomic Trait Database: -GC content -Variance of GC content -Dinucleotides -Number of rRNA -Codon usage -Amino acid composition -Acidic to basic amino acids ratio -% of Transcriptional factors -% of classified reads -Functional content -Functional diversity -Taxonomic content -Taxonomic diversity After the retrieval performs the ecological analyses described in Barberan et al. 2012 (http://dx.doi.or...

Created: 2012-12-19 | Last updated: 2014-11-12

Credits: Antonio Fernandez-Guerra Renzo Peliny BioVeL

Bioclipse Scripting Language

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Egon Willighagen

Download QSAR data sets using the OpenTox ... (1)

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Bioclipse script that uses the OpenTox API 1.1 to download all QSAR data sets from a given service.

Created: 2010-03-22

Credits: Egon Willighagen

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booiiing

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EPR-Solver

Created: 2009-06-05 16:46:06 | Last updated: 2009-06-05 18:10:35

Credits: booiiing

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This little perl-script automatically probes all assignments (g1, g2, g3) to (gx, gy, gz) (including negated values) in EPR/ESR (electron paramagnetic resonance / electron spin resonance) and tests them for several conditions. In the end, it gives you the assignements, as well as Eg, E1, E2, V/Delta and a, b, c. It is published under the terms of the GNU General Public Licence. Thus uploading is allowed for everyone to make it easier to contribute.

File type: Trident (Package)

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Taverna 2

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Renzo

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Microbial Metagenomic Trait Calculation an... (3)

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This workflow calculates the microbial traits of your metagenome and retrieves additional traits data from the Microbial Metagenomic Trait Database http://mb3is.megx.net/mg-traits. The list of traits: - GC content - Variance of GC content - Dinucleotides - Number of rRNA - Codon usage - Amino acid composition - Acidic to basic amino acids ratio - % of Transcriptional factors - % of classified reads - Functional content - Functional diversity - Taxonomic content - Taxonomic diversity As ...

Created: 2014-10-03 | Last updated: 2015-06-12

Credits: Renzo Antonio Fernandez-Guerra

Attributions: Microbial Metagenomic Trait Statistical Analysis Workflow

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Jose Enrique Ruiz

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Extraction of Properties from a Sample of Galaxies

Created: 2013-01-05 16:54:48 | Last updated: 2013-01-05 16:57:46

Credits: Jose Enrique Ruiz

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This document describes the "Galaxies Sample Selection" Research Object

File type: Adobe PDF

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Jose Enrique Ruiz

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Galaxies Sample Selection Research Object

Created: 2013-01-05 16:51:56 | Last updated: 2013-01-05 16:59:16

In order to understand the evolution of galaxies, detailed analysis of images plays a key role. During the last years telescopes working at different wavelengths have been imaging the whole sky. One example of this is the Sloan Digital Sky Survey. The generated images provides a wealth of information, publicly available, and hence allowing them to be used by any interested group in the study of their own samples of objects or generation of new samples. The two main processing of the ima...

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Taverna 2

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Jose Enrique Ruiz

Environment (2)

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From a previously selected cube of galaxies residing in a remote database, we provide extragalactic environment parameters for all galaxies sample. This workflow takes as input the path of the tabular *.pckl Python pickle dataset created in the previous workflow, as well as the database connection settings and several criteria on how to filter the potential companions of the target galaxies. It provides a file with the SDSS identifiers of each target galaxy of the sample, environmental estim...

Created: 2013-01-04 | Last updated: 2013-01-14

Credits: Juandesant Jsm

Taverna 2

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Jose Enrique Ruiz

Intialize Sample (2)

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This workflow saves a tabular *.pckl Python pickle dataset in the local file system, containing values calculated on physical parameters associated to potential companions of a sample of target galaxies. These original physical parameters are extracted from a postgreSQL database, containing information of all galaxies covered by the SDSS spectroscopic survey. The workflow first access the external database located in the AMIGA server and selects the target galaxies from the sample (those havi...

Created: 2013-01-04 | Last updated: 2013-01-05

Credits: Juandesant Jsm

BioExtract Server

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Carol Lushbough

Non-redundant protein alignments (1)

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Execute BLASTP program to search protein databases using a protein query: Input file from iPlant Discovery Environment Save the data extract of similar sequences created by BLASTP Execute XMKNR to a compute a non-redundant set from a large collection of protein sequences. Input from the data extract created by BLASTP. Perform multiple sequence alignments using Clustal Omega and TCoffee Input from data extract created by XMKNR To execute this workflow, you need to be logged into the Bio...