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Blob Physical Contiguity of "The Concept" : The Concept of "Physical Contiguity" rev

Created: 05/02/10 @ 03:37:55 | Last updated: 05/02/10 @ 19:31:11

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract It is an entity of nature,  the human conceiver that emerges ?the concept?. It might be conjectured that in order for  a human  conceiver to conceive a concept of ?the concept?, as a subset of nature, first he must have a concept of nature with which to commence investigation into the nature of ?the  concept?.  Second,  the nature of ?the concept? might be expected to be an emergence from the individuals? concept of nature; in essence to reflect a conce...

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Blob Taverna microarray BMC Bioinformatics paper

Created: 04/02/10 @ 11:35:51 | Last updated: 04/02/10 @ 11:35:52

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Blob BADNUG Beta Anion Decay Neutron Uptake Generator

Created: 12/01/10 @ 22:45:35

Credits: User Radarnetzone

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Blob Uniqueness, Self Belonging and Intercourse in Nature-New Version(rev)

Created: 09/01/10 @ 04:42:07 | Last updated: 09/01/10 @ 04:42:16

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract Biological organization is discussed within a holistic framework . A new orientation is presented of natural processes with  an approach in model construction that is focused strictly on physical form and centered away from abstractions that escape the perceptual senses,  lead towards the postulation of non-verifiable and non-witnessible  entities.  A universal construction composed of first perspective representations of path, witness as unique loci in volumes o...

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Blob biobanking conference

Created: 05/01/10 @ 14:23:38

Credits: User Izja

License: Creative Commons Attribution-Share Alike 3.0 Unported License

You are probably aware, just wanted to make sure

File type: Chemistry Plan

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Blob What Happened? Are We Asking or Telling?

Created: 02/01/10 @ 04:12:39 | Last updated: 02/01/10 @ 04:12:41

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract      A conceptual parallel is created between studies in anthropology and natural science.  A  space occupied by “the conceptualization”  is argued to not only parallel  symbolically the scientifically conceived value of volume as space, but to have an equal meaning- the spaces of the conceptual ordering of nature as manifestations of energy are held to be paralleling  manifestations of the same energies that mold the environm...

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Blob Physical Contiguity of "The Concept" : The Concept of "Physical Contiguity" rev

Created: 05/02/10 @ 03:37:55 | Last updated: 05/02/10 @ 19:31:11

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract It is an entity of nature,  the human conceiver that emerges ?the concept?. It might be conjectured that in order for  a human  conceiver to conceive a concept of ?the concept?, as a subset of nature, first he must have a concept of nature with which to commence investigation into the nature of ?the  concept?.  Second,  the nature of ?the concept? might be expected to be an emergence from the individuals? concept of nature; in essence to reflect a conce...

File type: Adobe PDF

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Blob Taverna microarray BMC Bioinformatics paper

Created: 04/02/10 @ 11:35:51 | Last updated: 04/02/10 @ 11:35:52

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: Adobe PDF

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Blob BADNUG Beta Anion Decay Neutron Uptake Generator

Created: 12/01/10 @ 22:45:35

Credits: User Radarnetzone

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: image/bmp

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 11 times | Downloaded: 5 times

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Blob Uniqueness, Self Belonging and Intercourse in Nature-New Version(rev)

Created: 09/01/10 @ 04:42:07 | Last updated: 09/01/10 @ 04:42:16

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract Biological organization is discussed within a holistic framework . A new orientation is presented of natural processes with  an approach in model construction that is focused strictly on physical form and centered away from abstractions that escape the perceptual senses,  lead towards the postulation of non-verifiable and non-witnessible  entities.  A universal construction composed of first perspective representations of path, witness as unique loci in volumes o...

File type: Adobe PDF

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Blob biobanking conference

Created: 05/01/10 @ 14:23:38

Credits: User Izja

License: Creative Commons Attribution-Share Alike 3.0 Unported License

You are probably aware, just wanted to make sure

File type: Chemistry Plan

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Blob What Happened? Are We Asking or Telling?

Created: 02/01/10 @ 04:12:39 | Last updated: 02/01/10 @ 04:12:41

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

Abstract      A conceptual parallel is created between studies in anthropology and natural science.  A  space occupied by “the conceptualization”  is argued to not only parallel  symbolically the scientifically conceived value of volume as space, but to have an equal meaning- the spaces of the conceptual ordering of nature as manifestations of energy are held to be paralleling  manifestations of the same energies that mold the environm...

File type: Adobe PDF

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Blob Genetics Reconstrued From the Mathematics of Einstein and Euclid

Created: 18/07/09 @ 19:00:59 | Last updated: 21/12/09 @ 17:36:49

Credits: User M. Kirsh

License: Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License

A new perspective of nature is introduced based on a visit to the Plane Geometry of Euclid, The Paralle Postulate and a reinterpretation of the theory of relativity. Nature is redifined  as a special case of proximity that is different from normally construed physical proximity that is presented to perception. The world is considered as a special case in which the Laws of Motion of Newton and Special Relativity of Einstein are hopefuly united into a single frame. The science of...

File type: Adobe PDF

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Blob Smiles Search of ChemSpider

Created: 27/02/08 @ 16:21:30 | Last updated: 04/03/09 @ 10:01:13

Credits: User Paul Dobson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A Pipeline Pilot protocol to search ChemSpider by structure (smiles string) to illustrate use of the ChemSpider wsdl

File type: XML

Rating: 4.0 / 5 (1 rating) | Comments: 0 | Viewed: 143 times | Downloaded: 4 times

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Blob From biologist to web service to Taverna to myExperiment to biologist

Created: 21/03/08 @ 19:00:24 | Last updated: 23/03/08 @ 10:39:27

Credits: User Marco Roos User Martijn Schuemie Network-member AID Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A movie to show the principle of the round trip from a biology question via pieces of code wrapped as web services and combined into a workflow (computational experiment) in Taverna, via uploading to myExperiment and back to the biologist through myExperiment's run facility. NB: at the time of uploading this movie the runner-option was in test-phase. It is important to note that the workflow combines the work of various scientists with different expertise and some at remote locations around ...

File type: AVI video

Rating: 1.0 / 5 (1 rating) | Comments: 1 | Viewed: 123 times | Downloaded: 137 times

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Blob Taverna tutorial

Created: 03/03/08 @ 11:05:26 | Last updated: 03/03/08 @ 11:20:45

Credits: User Franck Tanoh User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A step by step guide on how to build workflows in Taverna. This tutorial is designed for any background. i welcome your comments and suggestions.

File type: PowerPoint presentation

Rating: 4.0 / 5 (2 ratings) | Comments: 4 | Viewed: 117 times | Downloaded: 213 times

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Blob Output from FLOSS Communication Centralization Workflow

Created: 10/02/08 @ 01:56:29 | Last updated: 09/06/08 @ 21:53:03

Credits: User Andrea Wiggins User Crowston User James Howison

Attributions: Workflow FLOSS Communication Centralization Plot, Exponentially Weighted

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This example shows the communication dynamics in the Gaim project's "users helping users" forum.

File type: PNG image

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Blob Taverna tutorial

Created: 03/03/08 @ 11:15:10 | Last updated: 03/03/08 @ 11:16:11

Credits: User Franck Tanoh User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A step by step guide on how to build workflows in Taverna.  Biology oriented but  should be ok with other background with a 'tiny'  Biology knowledge.  I welcome your comments and suggestions.

File type: PowerPoint presentation

Rating: 4.0 / 5 (1 rating) | Comments: 0 | Viewed: 75 times | Downloaded: 140 times

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Blob A Taverna Users Guide

Created: 04/08/08 @ 17:40:21 | Last updated: 04/08/08 @ 17:40:22

Credits: User Paul Fisher User Katy Wolstencroft User Franck Tanoh

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: PowerPoint presentation

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Blob An Introduction to Taverna and myExperiment - Background

Created: 04/08/08 @ 17:49:10 | Last updated: 04/08/08 @ 17:49:11

Credits: User Paul Fisher User Franck Tanoh User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: PowerPoint presentation

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Blob Introduction to NCeSS Data Mining Pilot Project

Created: 22/11/07 @ 15:51:42

Credits: User Yuwei Lin

License: Creative Commons Attribution-Share Alike 3.0 Unported License

These slides created by Jon Gibson for his presentation at the 3rd e-Social Science Conference at Ann Arbor (USA) summarise the progress of the NCeSS Data Mining Pilot Project. Two social scientific datasets are used: European Work and Employment Survey, and English Longitudinal Study of Aging.

File type: Adobe PDF

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Blob Installing java certificates for services using SSL

Created: 15/10/08 @ 09:05:45 | Last updated: 16/02/09 @ 07:37:39

Credits: User Wassinki

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This jar file, designed by sun microsystems, helps you to install certificates for java to access services using a secure socket. The complete documentation of this small java tool, including its source, can be found at: http://blogs.sun.com/andreas/entry/no_more_unable_to_find In this document, I will explain how to create a keystore holding the certificate required to access services provided by www.bioinformatics.nl . To install the certificate for www.bioinformatics.nl, do the follow...

File type: Java archive

Rating: 0.0 / 5 (0 ratings) | Comments: 1 | Viewed: 66 times | Downloaded: 86 times

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Blob The Data Playground: An Intuitive Workflow Specification Environment

Created: 02/06/08 @ 14:46:40

Credits: User Katy Wolstencroft User Andrew Gibson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a copy of the paper we wrote for the 3rd International Conference on e-Science and Grid Computing 2007 (http://www.escience2007.org/index.asp). It won the Best Paper award!  

File type: Adobe PDF

Rating: 4.0 / 5 (1 rating) | Comments: 0 | Viewed: 59 times | Downloaded: 79 times

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Blob Taverna tutorial

Created: 03/03/08 @ 11:05:26 | Last updated: 03/03/08 @ 11:20:45

Credits: User Franck Tanoh User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A step by step guide on how to build workflows in Taverna. This tutorial is designed for any background. i welcome your comments and suggestions.

File type: PowerPoint presentation

Rating: 4.0 / 5 (2 ratings) | Comments: 4 | Viewed: 117 times | Downloaded: 213 times

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Blob Example XML file

Created: 26/09/08 @ 12:12:41 | Last updated: 26/09/08 @ 12:12:42

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

XML file to be used for example workflows

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 34 times | Downloaded: 190 times

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Blob Taverna tutorial

Created: 03/03/08 @ 11:15:10 | Last updated: 03/03/08 @ 11:16:11

Credits: User Franck Tanoh User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A step by step guide on how to build workflows in Taverna.  Biology oriented but  should be ok with other background with a 'tiny'  Biology knowledge.  I welcome your comments and suggestions.

File type: PowerPoint presentation

Rating: 4.0 / 5 (1 rating) | Comments: 0 | Viewed: 75 times | Downloaded: 140 times

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Blob From biologist to web service to Taverna to myExperiment to biologist

Created: 21/03/08 @ 19:00:24 | Last updated: 23/03/08 @ 10:39:27

Credits: User Marco Roos User Martijn Schuemie Network-member AID Network-member myGrid

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A movie to show the principle of the round trip from a biology question via pieces of code wrapped as web services and combined into a workflow (computational experiment) in Taverna, via uploading to myExperiment and back to the biologist through myExperiment's run facility. NB: at the time of uploading this movie the runner-option was in test-phase. It is important to note that the workflow combines the work of various scientists with different expertise and some at remote locations around ...

File type: AVI video

Rating: 1.0 / 5 (1 rating) | Comments: 1 | Viewed: 123 times | Downloaded: 137 times

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Blob An Introduction to Taverna and myExperiment - Background

Created: 04/08/08 @ 17:49:10 | Last updated: 04/08/08 @ 17:49:11

Credits: User Paul Fisher User Franck Tanoh User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: PowerPoint presentation

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Blob Workflow re-use and discovery in bioinformatics

Created: 03/10/08 @ 16:34:45 | Last updated: 03/10/08 @ 16:34:46

Credits: User Antoon Goderis

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

Antoon Goderis, PhD thesis, University of Manchester, 2008.

File type: Adobe PDF

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Blob Example XSLT file

Created: 26/09/08 @ 12:13:31 | Last updated: 26/09/08 @ 12:13:32

Credits: User Alan Williams

License: Creative Commons Attribution-Share Alike 3.0 Unported License

XSLT file to be used for example workflows

File type: Binary data

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Blob An Introduction to Taverna Tutorial

Created: 17/06/08 @ 14:17:21 | Last updated: 17/06/08 @ 14:17:20

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: PowerPoint presentation

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Blob Installing java certificates for services using SSL

Created: 15/10/08 @ 09:05:45 | Last updated: 16/02/09 @ 07:37:39

Credits: User Wassinki

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This jar file, designed by sun microsystems, helps you to install certificates for java to access services using a secure socket. The complete documentation of this small java tool, including its source, can be found at: http://blogs.sun.com/andreas/entry/no_more_unable_to_find In this document, I will explain how to create a keystore holding the certificate required to access services provided by www.bioinformatics.nl . To install the certificate for www.bioinformatics.nl, do the follow...

File type: Java archive

Rating: 0.0 / 5 (0 ratings) | Comments: 1 | Viewed: 66 times | Downloaded: 86 times

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Blob The Data Playground: An Intuitive Workflow Specification Environment

Created: 02/06/08 @ 14:46:40

Credits: User Katy Wolstencroft User Andrew Gibson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a copy of the paper we wrote for the 3rd International Conference on e-Science and Grid Computing 2007 (http://www.escience2007.org/index.asp). It won the Best Paper award!  

File type: Adobe PDF

Rating: 4.0 / 5 (1 rating) | Comments: 0 | Viewed: 59 times | Downloaded: 79 times

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Blob Smiles Search of ChemSpider

Created: 27/02/08 @ 16:21:30 | Last updated: 04/03/09 @ 10:01:13

Credits: User Paul Dobson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A Pipeline Pilot protocol to search ChemSpider by structure (smiles string) to illustrate use of the ChemSpider wsdl

File type: XML

Rating: 4.0 / 5 (1 rating) | Comments: 0 | Viewed: 143 times | Downloaded: 4 times

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Blob BiomartandEMBOSS_test

Created: 27/02/09 @ 17:26:04

Credits: User Raj Bari

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 30 times | Downloaded: 20 times

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Blob The Data Playground: An Intuitive Workflow Specification Environment

Created: 02/06/08 @ 14:46:40

Credits: User Katy Wolstencroft User Andrew Gibson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a copy of the paper we wrote for the 3rd International Conference on e-Science and Grid Computing 2007 (http://www.escience2007.org/index.asp). It won the Best Paper award!  

File type: Adobe PDF

Rating: 4.0 / 5 (1 rating) | Comments: 0 | Viewed: 59 times | Downloaded: 79 times

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Blob Test Input for Mapping oligonucleotides to an assembly

Created: 11/12/08 @ 12:06:37 | Last updated: 11/12/08 @ 12:21:54

Credits: User Wassinki

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a small test set to quickly test the workflow. This test set can be run on almost any computer and takes 5 minutes approximately.

File type: XML

Rating: 5.0 / 5 (1 rating) | Comments: 0 | Viewed: 32 times | Downloaded: 18 times

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Blob Murin.owl ontology from Bio2RDF project

Created: 17/02/09 @ 05:02:44

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: Binary data

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 28 times | Downloaded: 32 times

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