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Showing 51 results. Use the filters on the left and the search box below to refine the results.
Tag: bioinformatics Licence: by-sa
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Blob Popfly Blocks for Protein Characteristics and Predic...

Created: 2008-11-27 10:17:41 | Last updated: 2008-12-01 07:13:40

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics and Prediction Mashup 1. The mashup can be viewed at: http://www.popfly.com/users/fsn/Protein%20Characteristics%20and%20Prediction%201

File type: ZIP archive

Comments: 0 | Viewed: 44 times | Downloaded: 27 times

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Blob Popfly Blocks for Protein Prediction Mashup 2

Created: 2008-11-27 10:15:10 | Last updated: 2008-12-01 07:16:18

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Prediction Mashup 2. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Prediction%20Mashup%201

File type: ZIP archive

Comments: 0 | Viewed: 42 times | Downloaded: 25 times

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Blob Popfly Blocks for Protein Prediction Mashup 1

Created: 2008-11-27 10:13:29 | Last updated: 2008-12-01 07:15:28

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Prediction Mashup 1. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Prediction%20Mashup%201  

File type: ZIP archive

Comments: 0 | Viewed: 41 times | Downloaded: 29 times

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Blob Popfly Blocks for Protein Characteristics Mashup 1

Created: 2008-11-27 10:11:14 | Last updated: 2008-12-01 07:14:32

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Popfly blocks for Protein Characteristics Mashup 1. The mashup can be viewed at: www.popfly.com/users/fsn/Protein%20Characteristics%20Mashup%201  

File type: ZIP archive

Comments: 0 | Viewed: 42 times | Downloaded: 23 times

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Blob Protein Analysis Popfly Blocks

Created: 2008-11-27 10:03:04 | Last updated: 2008-12-01 07:17:33

Credits: User Felicity

License: Creative Commons Attribution-Share Alike 3.0 Unported License

A zip file containing Popfly blocks for protein analysis. It also includes a file explaining the function of each block as well as a list of mashups in which these blocks have been used.

File type: ZIP archive

Comments: 0 | Viewed: 52 times | Downloaded: 29 times

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Blob LIFEsparks biotechnology network

Created: 2008-10-19 11:05:10 | Last updated: 2008-10-19 11:12:58

Credits: User Suza Adam

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The LIFEsparks biopartnering social forum aims to boost the commercial success of Southern African initiatives and start-up companies focused the life sciences sector (biotechnology and medical devices), vis-a-vis allowing participants to share ideas, knowledge and to present their business and or investment opportunities to potential partners and funders.

File type: JPEG image

Comments: 0 | Viewed: 104 times | Downloaded: 52 times

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Workflow Non-redundant protein alignments (1)

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Execute BLASTP program to search protein databases using a protein query: Input file from iPlant Discovery Environment Save the data extract of similar sequences created by BLASTP Execute XMKNR to a compute a non-redundant set from a large collection of protein sequences. Input from the data extract created by BLASTP. Perform multiple sequence alignments using Clustal Omega and TCoffee Input from data extract created by XMKNR To execute this workflow, you need to be logged into the Bio...

Created: 2012-12-19 | Last updated: 2012-12-19

Credits: User Carol Lushbough

Workflow NCBI Protein Clustal Omega Alignment (1)

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Searches NCBI Proteins for a given organism and protein. User VMatch (xmknr) Vmatch, a versatile software tool for efficiently solving large scale sequence matching tasks to remove possible dubplcate and clustal omega to generate a multiple sequence alignment. Clustal Omega is the latest addition to the Clustal family. It offers a significant increase in scalability over previous versions, allowing hundreds of thousands of sequences to be aligned in only a few hours. It will also make u...

Created: 2012-08-31

Credits: User Carol Lushbough

Workflow Match gene lists based on information in l... (7)

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[THIS WORKFLOW IS IN BETA STAGE] This workflow computes the match between two lists of Entrez Gene Identifiers by means of concept profile matching (Jelier et al., van Haagen et al.). The result of this is a list of concepts ordered by their matching score (the length of the list set by maxMatchNr). Of this list the summed scores are explained by computing the concepts that contribute most to the combination of the matching genes. Example to explain (by analogy): When a group of informatic...

Created: 2012-04-17 | Last updated: 2012-04-25

Credits: User Marco Roos User Reinout van Schouwen User Eleni User Kristina Hettne Network-member BioSemantics

Attributions: Workflow Match concept profiles Workflow Explain concept scores

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Workflow Extract Gene Sequence with Kepler (1)

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This is a workflow which allows one to extract gene sequence information using the accession number as the input.  Multiple outputs include a file output of sequence header information, as well as one output window of base pair count, ratios and gene sequence.

Created: 2011-10-05 | Last updated: 2011-10-05

Credits: User Wdsnellg

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