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Tag: matrix User: Maria Paula Balcazar-Vargas Licence: by-sa Group: BioVeL internal
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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Eigen analysis pack


Created: 2014-07-03 15:57:49 | Last updated: 2014-07-25 11:18:57

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Eigen analysis workflow provides an environment for the analysis of a stage-matrix and perform several analyses on it.The Eigen analysis results are a set of demographic statistics:Lambda or dominant eigenvalue (λ).The stable stage distribution (w).The sensitivity matrixThe Elasticity matrix.Reproductive value (v).The damping ratio (ρ).

3 items in this pack

Comments: 0 | Viewed: 44 times | Downloaded: 33 times

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Taverna 2
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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Stages vectors plots, Survival and Growth ... (2)

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The Stages vectors plots, Survival and Growth rate curves Workflow provides an environment to perform several analyses on a series of stage-matrices: - Survival values calculations per stage per year and its respective plot; - Growth rates (lambda) calculations per year and its respective plot; - Stage Vectors calculations and their respective plots. ====================================================== This workflow requires an instance of Rserve on localhost This workflow has been creat...

Created: 2014-07-02 | Last updated: 2014-08-29

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Gerard Oostermeijer

Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Damping ratio pack


Created: 2014-07-02 13:32:31 | Last updated: 2014-07-25 11:07:16

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Damping ratio pack contains a workflow that provides an environment to calculate the damping ratio of several matrices and plot them.The damping ratio can be considered as a measure of the intrinsic resilience of the population, describing how quickly transient dynamics decay following disturbance or perturbation regardless of population structure, the larger the p, the quicker the population converges ...

8 items in this pack

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Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Age specific survival analysis pack


Created: 2014-07-02 11:49:01 | Last updated: 2015-05-19 09:46:30

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The age-specific survival analysis pack has a workflow that analyse the basic information on the mean, variance and coefficient of variation (CV) of the time spent in each stage class and the mean and variance of the time to death.Analyses:Fundamental matrix (N)Variance (var)Coefficient of variation (CV)MeanetaVareta

3 items in this pack

Comments: 0 | Viewed: 46 times | Downloaded: 24 times

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Taverna 2
Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Damping ratio (2)

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The Damping ratio Workflow provides an environment to calculate the damping ratio of several matrices and plot them. The damping ratio can be considered as a measure of the intrinsic resilience of the population, describing how quickly transient dynamics decay following disturbance or perturbation regardless of population structure, the larger the p, the quicker the population converges. ============================================================= This workflow requires an instance of Rse...

Created: 2014-06-25 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Mikolaj Krzyzanowski User Jon Giddy User Gerard Oostermeijer

Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Matrix Population Model construction pack


Created: 2014-06-19 11:23:27 | Last updated: 2014-07-25 12:48:25

This pack contains a workflow, a file and documentation (tutorial to run the workflow).Creation of a stage matrix model from demographic monitoring of individuals in an animal or plant population Workflow for local executionThe Creation of a stage matrix model Workflow allows us to construct a stage o several stage matrices. This workflow create a stage matrix based on two years census data that contains transitions probabilities from each stage to the next, of tagged or mapped individuals of...

4 items in this pack

Comments: 0 | Viewed: 61 times | Downloaded: 29 times

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Taverna 2
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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel

Workflow Parametric Bootstrap or Resample a project... (3)

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The Parametric Bootstrap or Resample a projection matrix Workflow provides an environment to resample a projection matrix using a multinomial distribution for transitions and a log normal distribution for fertilities (Stubben, Milligan, and Nantel. 2011). The resample is based on number of plants surveyed. The projection matrix A is first split into separate transition and fertility matrices. Dead fates are added to the transition matrix and the columns are then sampled from a Multinomial dis...

Created: 2014-06-18 | Last updated: 2014-07-25

Credits: User Maria Paula Balcazar-Vargas User Jon Giddy User Gerard Oostermeijer

Attributions: Workflow Matrix Population Model analysis v12

Creator
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Pack Stage vectors, Survival and Growth rate curves (demo...


Created: 2014-04-03 08:11:33 | Last updated: 2014-07-25 12:41:24

This pack contains a workflow, a file and documentation (tutorial to run the workflow).The Stages vectors plots, Survival and Growth rate curves Workflow provides an environment to perform several analyses on a series of stage-matrices:Population projectionSurvival values calculations per stage per year and its respective plot;Growth rates (lambda) calculations per year and its respective plot;Stage Vectors calculations and their respective plots.

8 items in this pack

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4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling pooled data or weighted main matrix

Created: 2014-03-28 14:38:43

Credits: User Maria Paula Balcazar-Vargas User Gerard Oostermeijer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

File type: Plain text

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Uploader
4562?size=60x60 Nl Maria Paula Balcazar-Vargas
Project Biovel
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Blob Matrix Terschelling 92-93

Created: 2014-03-28 14:31:44

Credits: User Maria Paula Balcazar-Vargas

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a .txt file of a stage matrix of the species: Gentiana pneumonanthe, collected and published by Gerard Oostermeijer (Instituut voor Biodiversiteit en Ecosysteem Dynamica (IBED), Universiteit van Amsterdam).This file allow users to run the workflow: Life Table Response Experiments (LTRE)_Year Effect One Location V1 (http://www.myexperiment.org/packs/590.html)If you use the file please quote as:Oostermeijer, J.G.B. M.L. Brugman, E.R. de Boer; H.C.M. Den Nijs. 19...

File type: Plain text

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