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Type: Taverna 2 Tag: protein interaction

Workflow Bio2RDF: CPath search, rdfise and load dem... (1)

Search for a list of genes into the Pathway Commons interaction database and load the fetched triples into a triplestore. INSERT IN GRAPH < http://localhost/sesame/mem_rdf_db> {     CONSTRUCT{ ?s, ?p, ?o . }     FROM <>     WHERE {         SELECT ?s         FROM <>  ...

Created: 2009-02-19 | Last updated: 2009-02-19

Credits: User Francois Belleau

Workflow UniProt Protein Protein Network (1)

This workflow uses the Europe PMC Web Services searchPublications and getDatabaseLinks to reconstruct a protein-protein network based on co-occurence in the scientific literature, arbitrary filtered by a PubMed query, e.g. the word "complex" appearing in the title or abstract. The workflow also looks up the second degree connections, i.e. proteins co-occuring with proteins co-occuring with the protein given as input, but not with this protein itself. The output is a (1) Pajek graph file, a GM...

Created: 2015-12-04

Credits: User Magnus Palmblad User Yassene

Workflow Molecular Interactions from IntAct PSICQUI... (2)

Get molecular interaction data in psi-mitab25 from IntAct through its REST PSICQUIC service. As input you can use an Uniprot Acc like "P99999" or a MIQL query like "alias:KHDRBS1".

Created: 2011-05-29 | Last updated: 2011-10-05

Credits: User Rafael C. Jimenez

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