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Mitochondrial genome assembly _V2 (1)

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Created: 2021-12-14 | Last updated: 2021-12-14

Credits: Yash Munnalal Gupta

VCaP RNA-Seq Fusion gene detection with ST... (1)

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The end-to-end workflow starts by obtaining paired-end RNA-Seq data of the VCaP cell line via EGA. Galaxy determines the file type automatically with its built-in format detection system. The reads will be clipped before an alignment with STAR and STAR produces several output files that can be used for different analysis. The last tool is STAR-Fusion which was able to confirm the TMPRSS2-ERG fusion gene. 

Created: 2016-08-31 | Last updated: 2016-08-31

Credits: Y. Hoogstrate

vir-representative (1)

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Retrieve from NCBI and reduce redundancy in the viral database.

Created: 2016-08-09 | Last updated: 2016-08-09

Credits: Juliana Pegoraro

Galaxy workflow for the identification of ... (1)

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This approach screens three proteins against a given genome sequence, leading to a genome position were all three genes are located nearby. As usual in Galaxy workflows every parameter, including the proximity distance, can be changed and additional steps can be easily added. For example additional filtering to refine the initial BLAST hits, or inclusion of a third query sequence.https://github.com/bgruening/galaxytools/tree/master/workflows/ncbi_blast_plus/find_three_genes_located_nearby

Created: 2015-03-17

Credits: Björn Grüning

Galaxy workflow for the identification of ... (1)

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This approach screens two proteins against all nucleotide sequence from the NCBI nt database within hours on our cluster, leading to all organisms with an inter- esting gene structure for further investigation. As usual in Galaxy workflows every parameter, including the proximity distance, can be changed and additional steps can be easily added. For example additional filtering to refine the initial BLAST hits, or inclusion of a third query sequence.https://github.com/bgruening/galaxytools/tr...

Created: 2015-01-25

Credits: Björn Grüning

pipeline5 (1)

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Created: 2015-01-09 | Last updated: 2015-01-09

Credits: Chetan Joshi

Compute and correct GC bias in NGS data (1)

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Galaxy workflow based on deepTools which will compute and correct GC bias in your NGS data. For more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.

Created: 2014-04-03

Credits: Björn Grüning

Remove "chr" from the beginning of genomic... (1)

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Created: 2014-04-03

Credits: Björn Grüning

Add "chr" to the first column of a 6 colum... (1)

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Created: 2014-04-03

Credits: Björn Grüning

Heatmap of read coverages (single BAM file) (1)

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Created: 2014-04-03

Credits: Björn Grüning