Pack: Analysis of environmental sequences

Description:

Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH . The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are grouped using a categorical variable. The WF gives back a tabular and graphical representation of an entropy based partitioning of the information present in the sequence across the groupings, and a graphical and tabular representation of the contribution of each branch of the tree to the differentiation across groups of sample. Further as side results the WF gives the tree annotated with the per branch contribution to the differentiation across groups of sample in nexml or phyloxml format and all files necessary to produce ex.novo the annotated tree on itol, giving the possibility to the user to add taxonomic information.

Description:

Partitioning environmental sequencing data using categorical and phylogenetic information using PhyloH . The WF need a tree in newick format, a samplefile that show the where the leaf of the tree are found in the different sample and how many time, and a grouping file where the different sample are grouped using a categorical variable. The WF gives back a tabular and graphical representation of an entropy based partitioning of the information present in the sequence across the groupings, and a graphical and tabular representation of the contribution of each branch of the tree to the differentiation across groups of sample. Further as side results the WF gives the tree annotated with the per branch contribution to the differentiation across groups of sample in nexml or phyloxml format and all files necessary to produce ex.novo the annotated tree on itol, giving the possibility to the user to add taxonomic information.