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Showing 33 results. Use the filters on the left and the search box below to refine the results.
Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow create_model (10)

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Creates a model based on the specified parameters.

Created: 2013-12-10 | Last updated: 2014-12-04

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow select_matching_layers (5)

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Displays an interface where users can select matching layers (same variables) based on the labels of previously selected layers. This is typically needed when projecting a model into a different scenario, where the same variables selected for model creation need to be used on a different chronologic or geographic context. The interaction page may optionally include a label field.

Created: 2013-12-24 | Last updated: 2015-05-11

Creator
4080?size=60x60 Renato De Giovanni
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Pack ENM components


Created: 2013-12-06 17:57:57 | Last updated: 2014-11-17 19:06:40

ENM Components is a set of Taverna components (sub-workflows) specialized in ecological niche modelling (ENM) tasks. They simplify the creation of new workflows by encapsulating details that may not be trivial to implement and they can be reused across different workflows. To use ENM components on new workflows with the Taverna workbench, just click on “import new service” on the “service panel”, choose “component service”, select “myExperiment”...

25 items in this pack

Comments: 0 | Viewed: 78 times | Downloaded: 14 times

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Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow configure_external_test (5)

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Displays an interface allowing configuration of external test. Currently can be used to skip external test or run a cross validation procedure. In the later case, it is possible to specify the number of replicates, if AUC should be calculated, if confusion matrix should be calculated (using either a fixed threshold or lpt - lowest precision threshold).

Created: 2013-12-24 | Last updated: 2015-04-04

Taverna 2
Uploader
Avatar De Robert Kulawik
Project Biovel

Workflow BioVeL ESW DIFF Basic (4)

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this workflow is a basic version of the ESW DIFF, it computes an raster diff from GeoTIFF or ERDASImagine files and some statistics about the files and their difference without to display country borders and occurence points. For more about the input and output files see the BioVeL PSW workflow description: http://www.myexperiment.org/workflows/3647.html

Created: 2013-12-17 | Last updated: 2014-08-22

Credits: User Robert Kulawik

Attributions: Workflow BioVeL ESW DIFF - ENM Statistical Workflow with raster difference computation

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow loop_until_progress_complete (4)

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Loops until an asynchronous openModeller Web Service job is finished, i.e., keeps calling getProgress until it returns 100 (completed), -2 (aborted) or -3 (cancelled). NOTE: this is a "low level" component that was created to be used by other existing components, so end users may never need to use it at all.

Created: 2014-02-13 | Last updated: 2015-05-11

KNIME
Uploader
Avatar Marc Rurik

Workflow Scan range splitting for untargeted metabo... (1)

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This workflow analyzes untargeted HPLC-Orbitrap measurements split into separate or alternating scan ranges. The input nodes expect OpenMS consensusXML files that were exported using TextExporter. The workflow then combines the separate scan ranges, filters them utilizing blank and QC measurements, and performs a statistical analysis.Requirements:- KNIME Interactive R Statistics Integration

Created: 2016-01-14 | Last updated: 2016-01-14

Credits: User Marc Rurik

Taverna 2
Uploader
4059?size=60x60 Gb Aleksandra Pawlik

Workflow BioVeL workshop reduced full workflow (1)

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The workflow is a reduced version of the main workflow. It can be used to call web services to support biodiversity research. It fetches data from GBIF. The occurrences are then used to create a model using OpenModeller, test the model and to project the model. The projection of the model is currently a "native projection" i.e. it uses the same layers as those used to create the model. The services within the workflow will allow non-native projections

Created: 2013-09-04

Credits: User Katy Wolstencroft User Alan Williams

Attributions:

Taverna 2
Uploader
Avatar De Robert Kulawik
Project Biovel

Workflow BioVeL ESW DIFF - ENM Statistical Workflow... (16)

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The ENM Statistical Difference Workflow (ESW DIFF) allows the computation of the extent and intensity of change in species potential distribution through computation of the differences between two raster layers using the R statistical environment (R Core Team 2013). The difference file is computed from two input files (in this case present projection and 2050 projection) coming from the Ecological Niche Modelling (ENM) Workflow (http://www.myexperiment.org/workflows/3355). The difference bet...

Created: 2013-07-08 | Last updated: 2016-06-22

Credits: User Robert Kulawik

Taverna 2
Uploader
4080?size=60x60 Renato De Giovanni
Project Biovel

Workflow ENM resolution mix - single run version (6)

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Single run version of the workflow for comparing results of two kinds of ecological niche models: one using only low resolution layers and the other using a random mix of low and high resolution layers. Users select the study region and the environmental variables considered to be the main drivers of a virtual species niche. The workflow is all based on the ENM components, which use the openModeller Web Service (OMWS). After getting initial parameters from the user, the workflow generates a r...

Created: 2014-11-18 | Last updated: 2015-04-04

Credits: User Renato De Giovanni Network-member BioVeL

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Funded by: BioVeL, EPSRC, JISC, Microsoft

Affiliates: myGrid, Taverna, BioCatalogue
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