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Tag: scape

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Taverna 2

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Donal Fellows

SCAPE Assess Metrics (1)

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Assesses whether a set of metrics satisfy some provided Quality Level Definition (QLD). The QLD is given as a Schematron schema, and is evaluated by the Java tool library Jing. Jing (http://www.thaiopensource.com/relaxng/jing.html) is assumed to be installed in the current directory.

Created: 2013-08-22 | Last updated: 2013-08-22

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Donal Fellows

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SCAPE Image Migration Action

Created: 2013-04-04 10:45:50 | Last updated: 2013-11-14 11:20:52

These components handle the migration of images from one format to another.

3 items in this pack

Comments: 0 | Viewed: 38 times | Downloaded: 13 times

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Donal Fellows

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SCAPE Image Characterisation Component

Created: 2013-04-04 12:39:14 | Last updated: 2013-11-14 11:20:52

These components handle extraction of characteristics from an image.

5 items in this pack

Comments: 0 | Viewed: 51 times | Downloaded: 17 times

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Taverna 2

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Roman

Common SCAPE QA command line tool RESTful ... (1)

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The QA REST package enables creation of RESTful web service that wraps any QA command line tools. The main element of this workflow is a RESTful service designed in the SCAPE QA command line tools RESTful package https://github.com/openplanets/scape/tree/master/pc-qa-toolwrapper-rest. The Github project https://github.com/openplanets/scape/tree/master/xa-rester from Andy Jackson is a basis implementation for pc-qa-toolwrapper-rest package. The workflow comprises path to the RESTful servi...

Created: 2011-07-01 | Last updated: 2012-04-04

Credits: Roman

Taverna 2

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Roman

Extract histogram features from image file... (1)

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The main element of this workflow is a RESTful service designed in the SCAPE QA command line tools RESTful package https://github.com/openplanets/scape/tree/master/pc-qa-toolwrapper-rest. The Github project https://github.com/openplanets/scape/tree/master/xa-rester from Andy Jackson is a basis implementation for pc-qa-toolwrapper-rest package. The QA REST package enables creation of RESTful web service that wraps QA command line tool like ‘extractfeatures’ or ‘create’...

Created: 2011-07-01 | Last updated: 2012-04-04

Credits: Roman

Taverna 2

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Sven

JP2 to TIFF file format migration with qua... (1)

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This workflow reads a textfile containing absolute paths to JP2 image files and converts them to TIFF image files using Kakadu's j2k_to_image command line application (http://www.kakadusoftware.com). Based on the input text file, the workflow creates a Taverna list to be processed file by file. A temporary directory is created (createtmpdir) where the migrated image files and some temporary tool outputs are stored. Before converting the files, the JP2 input files are validated using the SC...

Created: 2013-02-07

Credits: Sven

Taverna 2

Uploader

Kraxner

Converts any ImageMagick supported image f... (1)

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SCAPE Migration Component

Created: 2014-02-12

Credits: Markus Plangg

Taverna 2

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Sven

Hadoop Large Document Collection Data Prep... (1)

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Workflow for preparing large document collections for data analysis. Different types of hadoop jobs (Hadoop-Streaming-API, Hadoop Map/Reduce, and Hive) are used for specific purposes. The *PathCreator components create text files with absolute file paths using the unix command 'find'. The workflow then uses 1) a Hadoop Streaming API component (HadoopStreamingExiftoolRead) based on a bash script for reading image metadata using Exiftool, 2) the Map/Reduce component (HadoopHocrAvBlockWidthMapR...