User: James Eales

Name: James Eales

Joined: Wednesday 21 November 2007 @ 08:48:01 (GMT)

Last seen: Monday 19 March 2012 @ 09:39:22 (GMT)

Email (public): james.eales [at] manchester.ac.uk

Website: http://www.bioinf.manchester.ac.uk/robertson/jeales/

Location: Manchester, United Kingdom

3 Friends

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2 Groups (member)

18 Workflows

4 Packs

10 Files

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James Eales has been credited 27 times

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Taverna 2 Original Uploader James Eales	One sentence per line (v1) Created: 06/05/11 @ 16:52:35 \| Last updated: 13/12/11 @ 15:58:54 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow accepts a plain text input and provides a single text document per input containing one sentence per line. Newline characters are removed from the original input. The OpenNLP sentence splitter is used to split the text, this is provided by University of Manchester Web Services. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 19 times \| Downloaded: 14 times Tags (7): e-lico \| sentence boundary detection \| sentence splitting \| text cleaning \| text encoding \| text mining \| xml invalid	View Download (v1)
Taverna 2 Original Uploader James Eales	Classification of GEO assays using RapidAnalytics (v2) Created: 04/05/11 @ 14:40:17 \| Last updated: 13/12/11 @ 16:01:13 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 28 times \| Downloaded: 19 times Tags (9): affymetrix \| assays \| classification \| column \| data mining \| e-lico \| geo \| svm \| table	View Download (v2)
Taverna 2 Original Uploader James Eales	Distance heatmap of GEO dataset produced by RapidAnalytics (v2) Created: 28/04/11 @ 14:15:33 \| Last updated: 13/12/11 @ 16:00:25 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 40 times \| Downloaded: 18 times Tags (6): affymetrix \| data mining \| distances \| e-lico \| geo \| heatmap	View Download (v2)
Taverna 2 Original Uploader James Eales	Agglomerative clustering of a GEO dataset using RapidAnalytics (v2) Created: 28/04/11 @ 14:12:33 \| Last updated: 13/12/11 @ 16:00:52 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License No description Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 47 times \| Downloaded: 18 times Tags (5): affymetrix \| clustering \| data mining \| e-lico \| geo	View Download (v2)
Taverna 2 Original Uploader James Eales	PUT data into RapidAnalytics (v1) Created: 27/04/11 @ 09:50:52 \| Last updated: 13/12/11 @ 16:04:06 License: Creative Commons Attribution-No Derivative Works 3.0 Unported License Use the example value for the input port Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 29 times \| Downloaded: 12 times This Workflow has no tags!	View Download (v1)
Taverna 2 Original Uploader James Eales	Terms from collection of text files (v1) Created: 22/02/10 @ 18:05:24 \| Last updated: 13/12/11 @ 15:55:39 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow will give you a set of candidate terms for each text file in a user-specified directory. You can also specify a c-value threshold that will restrict the terms to those with higher scores. This workflow was created using only nested workflows. These workflow components work on their own and can be linked together to form more complex workflows such as this. You can view the text mining workflow components in this pack. If you receive errors when running this workflow then... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 80 times \| Downloaded: 22 times Tags (4): e-lico \| term extraction \| termine \| text mining	View Download (v1)
Taverna 2 Original Uploader James Eales	Terms from collection of PDF files (v2) Created: 19/02/10 @ 10:52:29 \| Last updated: 13/12/11 @ 15:56:08 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow will give you a set of candidate terms for each PDF document in a user-specified directory. You can also specify a c-value threshold that will restrict the terms to those with higher scores. This workflow was created using only nested workflows. These workflow components work on their own and can be linked together to form more complex workflows such as this. You can view the text mining workflow components in this pack. If you receive errors when running this workflow t... Rating: 0.0 / 5 (0 ratings) \| Versions: 2 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 71 times \| Downloaded: 34 times Tags (4): e-lico \| term extraction \| termine \| text mining	View Download (v2)
Taverna 2 Original Uploader James Eales	Termine with c-value threshold (v1) Created: 19/02/10 @ 09:57:15 \| Last updated: 13/12/11 @ 15:52:56 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow accepts a list of sentences from a single document and returns the terms found by the TerMine web service. It also allows you to set a threshold c-value score so that only terms with a user-controlled probability (of being a real term) are returned as an output. To get sentences to supply to this workflow you can use the sentence splitting workflow. The TerMine service (used in this workflow) only accepts text in ASCII encoding, so you should also use the Clean p... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 105 times \| Downloaded: 22 times Tags (7): e-lico \| term \| term extraction \| termine \| text mining \| workflow component \| xpath	View Download (v1)
Taverna 2 Original Uploader James Eales	Sentence splitting (v1) Created: 19/02/10 @ 09:30:37 \| Last updated: 13/12/11 @ 15:52:36 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow will attempt to split up text into sentences, returning a list of sentences to the output port. The sentence splitting service makes use of the OpenNLP sentence detector and has been trained to work on english text. This workflow can be used to provide input to the Termine with c-value threshold workflow. This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 85 times \| Downloaded: 40 times Tags (5): e-lico \| sentence boundary detection \| sentence splitting \| text mining \| workflow component	View Download (v1)
Taverna 2 Original Uploader James Eales	PDF to plain text (v1) Created: 19/02/10 @ 09:07:41 \| Last updated: 13/12/11 @ 15:53:29 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow will extract the plain text content of PDF files supplied to the input port. You can connect the Load PDF from directory workflow to this workflows input. We recommend you send the output from this workflow to the Clean plain text workflow, because the PDF to text process can add characters into the text that are XML-invalid and therefore can not be sent to most services as plain text. Another way round this problem is to encode the text as Base64 using the handy loc... Rating: 5.0 / 5 (1 rating) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 145 times \| Downloaded: 64 times Tags (5): document format conversion \| e-lico \| pdf to text \| text mining \| workflow component	View Download (v1)
Taverna 2 Original Uploader James Eales	Load PDF from directory (v1) Created: 19/02/10 @ 08:59:01 \| Last updated: 13/12/11 @ 15:54:34 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow will automate the reading of a set of PDF files stored in a single directory (the path to which should be supplied as a single input value). This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 55 times \| Downloaded: 23 times Tags (6): e-lico \| input \| read file \| read pdf \| text mining \| workflow component	View Download (v1)
Taverna 2 Original Uploader James Eales	Load plain text from directory (v1) Created: 18/02/10 @ 19:09:07 \| Last updated: 13/12/11 @ 15:54:57 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow will automate the reading of a set of text files stored in a single directory (the path to which should be supplied as a single input value). It will assume that the text files are saved using the default character encoding for the system that Taverna is running on. This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 45 times \| Downloaded: 20 times Tags (6): e-lico \| input \| read file \| read text \| text mining \| workflow component	View Download (v1)
Taverna 2 Original Uploader James Eales	Clean plain text (v1) Created: 18/02/10 @ 18:59:35 \| Last updated: 13/12/11 @ 15:54:09 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow will remove any XML-invalid characters (these characters often appear in the output of PDF to text software) from any text supplied to the input port. This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 39 times \| Downloaded: 17 times Tags (6): e-lico \| text cleaning \| text encoding \| text mining \| workflow component \| xml invalid	View Download (v1)
Taverna 2 Original Uploader James Eales	Clean plain text (ASCII) (v1) Created: 18/02/10 @ 18:39:01 \| Last updated: 13/12/11 @ 15:53:46 Credits: James Eales License: Creative Commons Attribution-Share Alike 3.0 Unported License This workflow will remove any XML-invalid and non-ASCII characters (e.g. for sending to the ASCII-only Termine service) from any text supplied to the input port. This is a workflow component, designed to be used as a nested workflow inside a larger text mining or text processing workflow. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 48 times \| Downloaded: 22 times Tags (7): ascii \| e-lico \| text cleaning \| text encoding \| text mining \| workflow component \| xml invalid	View Download (v1)