User: Antoon Goderis
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Name: Antoon Goderis Joined: Tuesday 31 July 2007 @ 17:23:00 (GMT) Last seen: Monday 27 July 2009 @ 09:48:55 (GMT) Email (public): Not specified Website: http://www.cs.man.ac.uk/~goderisa Location: Belgium |
Antoon Goderis has been credited 7 times Antoon Goderis has an average rating of: 5.0 / 5 (3 ratings in total) for their items |
Forget Poirot, how about an infamous Belgian
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Not specifiedInterests:
Not specifiedField/Industry: Not specified
Occupation/Role(s): Former member of the myExperiment project
Organisation(s):
University of Manchester
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1. AffyidToGeneAnnotationnoGOIDandPepstats.xml
2. DDBJ_BLAST.xml
3. blast.xml
4. blast_to_fasta.xml
5. protein2dna.xml
6. linking3.xml
7. genomic_sequence.xml
8. linking1.xml
9. interpro_scan_2.xml
10. interpro_scan_3.xml
11. metabolic.xml
12. example.xml
13. affy_ids.xml
14. gene_ontology_diagram.xml
15. getgenesbyspecies.xml
16. maxdBrowse_strings.xml
17. stringList.xml
18. BlastComparer.xml
19. blast_GO.xml
20. gene_by_species.xml
21. protein_protein_interactions.xml
22. database_and_genes.xml
23. probeset_in_qtl.xml
24. genes_from_probesets.xml
25. bind-text.xml
26. bind-idsearch.xml
27. SUB_genes_info_names.xml
28. gene_info_to_gene_name.xml
29. string_complete.xml
30. Ensembl_genes_to_swiss_id.xml
31. ACC_to_GI.xml
32. metabolic_pathway.xml
33. parse_gene_name.xml
34. expression_values.xml
35. swiss_and_name.xml
36. swiss_and_name_seq.xml
37. parse_sequence.xml
38. interpro_url.xml
39. interpro_scan.xml
40. uniprot_search.xml
41. qtl_analysis.xml
42. complete_test.xml
43. remove_duplicates.xml
44. remove_duplicates_full.xml
45. maxdBrowse.xml
46. complete_deleted.xml
47. complete.xml
48. parse_uniprot.xml
49. Ensembl_id_2_Swissport_id.xml
50. lister.xml
51. linking.xml
52. remove_nulls.xml
53. complete_2.xml
54. text_mining.xml
55. Probeset_id_2_Swissport_id.xml
56. maxdBrowse_geneHunt.xml
57. extract_uniprot_embl_gi.xml
58. complete_3.1.xml
59. sub_gene_info_to_uniprot.xml
60. complete_2_text_mining.xml
61. gene_ontology_analysis.xml
62. gene_ontology_analysis_2.xml
63. parse_uniprot_2.xml
64. ensembl_genes_to_go_terms.xml
65. parse_gene_info.xml
66. ensembl_gene_info.xml
67. geneHunt.xml
68. parse_swiss.xml
69. Gi_to_pathway.xml
70. add_ncbi_to_string.xml
71. blast_simplifier.xml
72. geneId_to_pathway.xml
73. unnested_qtl_pathway_2.xml
74. unnested_qtl_pathway_3.xml
75. unnested_qtl_pathway.xml
76. unnested_qtl_pathway_4.xml
77. qtl_pathway_3.xml
78. maxdBrowse_upreg.xml
79. 3
80. 1
81. BLASTP with simplified results returned
82. Picture of me
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Created: 12/07/08 @ 21:14:58 | Last updated: 12/07/08 @ 21:16:01
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Created: 12/07/08 @ 10:59:33 | Last updated: 12/07/08 @ 11:00:38
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Created: 12/07/08 @ 10:56:39 | Last updated: 12/07/08 @ 10:56:54
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Created: 12/07/08 @ 10:55:37 | Last updated: 12/07/08 @ 10:55:52
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Created: 12/07/08 @ 10:54:27 | Last updated: 12/07/08 @ 10:54:44
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Created: 12/07/08 @ 10:53:12 | Last updated: 12/07/08 @ 10:53:27
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This workflow links between a specified EMBL accesion number to corresponding identifiers in the MEDLINE database.
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Created: 12/07/08 @ 10:52:14 | Last updated: 12/07/08 @ 10:52:34
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Created: 12/07/08 @ 10:51:05 | Last updated: 12/07/08 @ 10:51:21
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Created: 12/07/08 @ 10:48:08 | Last updated: 12/07/08 @ 10:48:29
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Created: 12/07/08 @ 10:44:19 | Last updated: 12/07/08 @ 10:45:22
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Created: 12/07/08 @ 10:42:42 | Last updated: 12/07/08 @ 10:42:56
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.
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Created: 12/07/08 @ 10:41:23 | Last updated: 12/07/08 @ 10:41:40
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Created: 12/07/08 @ 10:40:21 | Last updated: 12/07/08 @ 10:40:43
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Created: 12/07/08 @ 10:39:09 | Last updated: 12/07/08 @ 10:39:32
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow builds up a subgraph of the Gene Ontology (http://www.geneontology.org) to show the context for a supplied term or terms. It shows this context by colouring all ancestors of the term, all children and all siblings. By default, ancestors of the supplied term or terms are coloured orange, siblings purple and direct children teal. Other terms appear in the default wheat colour.
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Created: 12/07/08 @ 10:37:57 | Last updated: 12/07/08 @ 10:38:21
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Created: 12/07/08 @ 10:35:17 | Last updated: 12/07/08 @ 10:36:46
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Created: 12/07/08 @ 10:33:04 | Last updated: 12/07/08 @ 10:33:27
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Created: 12/07/08 @ 10:30:46 | Last updated: 12/07/08 @ 10:32:11
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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.
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Created: 12/07/08 @ 10:29:41 | Last updated: 12/07/08 @ 10:29:58
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Created: 12/07/08 @ 10:28:19 | Last updated: 12/07/08 @ 10:28:52
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Created: 12/07/08 @ 10:27:05 | Last updated: 12/07/08 @ 10:27:18
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Created: 12/07/08 @ 10:26:05 | Last updated: 12/07/08 @ 10:26:25
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Created: 12/07/08 @ 10:25:08 | Last updated: 12/07/08 @ 10:25:22
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Created: 12/07/08 @ 10:24:11 | Last updated: 12/07/08 @ 10:24:26
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Created: 12/07/08 @ 10:23:10 | Last updated: 12/07/08 @ 10:23:23
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Created: 12/07/08 @ 10:22:13 | Last updated: 12/07/08 @ 10:22:29
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Created: 12/07/08 @ 10:20:46 | Last updated: 12/07/08 @ 10:21:18
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Created: 12/07/08 @ 10:19:16 | Last updated: 12/07/08 @ 10:19:48
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Created: 12/07/08 @ 10:17:40 | Last updated: 12/07/08 @ 10:18:27
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Created: 12/07/08 @ 10:16:31 | Last updated: 12/07/08 @ 10:16:48
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Created: 12/07/08 @ 10:14:43 | Last updated: 12/07/08 @ 10:15:28
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Created: 12/07/08 @ 10:13:37 | Last updated: 12/07/08 @ 10:13:50
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A list of Kegg entires are supplied to the Kegg database which then retrieves the associated metabolic pathways for each entry supplied. e.g. Ids takes in a value of 351, whilst abbr takes in a value of hsa. Thus hsa:351 corresponds to neurodegenerative disorders and alzheimers disease pathways. [fisherp@cs.man.ac.uk]
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Created: 12/07/08 @ 10:12:36 | Last updated: 12/07/08 @ 10:12:55
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Created: 12/07/08 @ 10:11:18 | Last updated: 12/07/08 @ 10:11:38
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Created: 12/07/08 @ 10:10:10 | Last updated: 12/07/08 @ 10:10:34
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Created: 12/07/08 @ 10:07:42 | Last updated: 12/07/08 @ 10:07:57
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Created: 12/07/08 @ 10:05:17 | Last updated: 12/07/08 @ 10:05:32
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Created: 12/07/08 @ 10:03:35 | Last updated: 12/07/08 @ 20:19:04
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.
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Created: 12/07/08 @ 10:02:03 | Last updated: 12/07/08 @ 10:02:17
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Created: 12/07/08 @ 10:00:53 | Last updated: 12/07/08 @ 10:01:18
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Created: 12/07/08 @ 09:59:53 | Last updated: 12/07/08 @ 10:00:11
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Created: 12/07/08 @ 09:58:25 | Last updated: 12/07/08 @ 09:58:43
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Created: 12/07/08 @ 09:56:46 | Last updated: 12/07/08 @ 09:57:40
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Created: 12/07/08 @ 09:55:38 | Last updated: 12/07/08 @ 09:55:52
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Created: 12/07/08 @ 09:53:37 | Last updated: 12/07/08 @ 09:54:51
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Created: 12/07/08 @ 09:52:27 | Last updated: 12/07/08 @ 09:52:42
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Created: 12/07/08 @ 09:51:09 | Last updated: 12/07/08 @ 09:51:36
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Created: 12/07/08 @ 09:49:45 | Last updated: 12/07/08 @ 09:50:26
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Created: 12/07/08 @ 09:48:28 | Last updated: 12/07/08 @ 09:48:42
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Created: 12/07/08 @ 09:46:59 | Last updated: 12/07/08 @ 09:47:42
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Created: 12/07/08 @ 09:45:59 | Last updated: 12/07/08 @ 09:46:13
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Created: 12/07/08 @ 09:45:02 | Last updated: 12/07/08 @ 09:45:21
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Created: 12/07/08 @ 09:44:05 | Last updated: 12/07/08 @ 09:44:22
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Created: 12/07/08 @ 09:42:44 | Last updated: 12/07/08 @ 09:43:00
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Created: 12/07/08 @ 09:41:31 | Last updated: 12/07/08 @ 20:19:45
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Created: 12/07/08 @ 09:40:38 | Last updated: 12/07/08 @ 09:40:52
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Created: 12/07/08 @ 09:38:57 | Last updated: 12/07/08 @ 09:39:12
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Created: 12/07/08 @ 09:37:32 | Last updated: 12/07/08 @ 09:38:10
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Created: 12/07/08 @ 09:36:15 | Last updated: 12/07/08 @ 09:36:33
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Created: 12/07/08 @ 09:33:56 | Last updated: 12/07/08 @ 09:35:15
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Created: 12/07/08 @ 09:31:13 | Last updated: 12/07/08 @ 09:32:55
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Created: 12/07/08 @ 09:30:11 | Last updated: 12/07/08 @ 09:30:26
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Created: 12/07/08 @ 09:29:12 | Last updated: 12/07/08 @ 09:29:26
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Created: 12/07/08 @ 09:27:59 | Last updated: 12/07/08 @ 09:28:18
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Created: 12/07/08 @ 09:27:06 | Last updated: 12/07/08 @ 09:27:22
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Created: 12/07/08 @ 09:25:59 | Last updated: 12/07/08 @ 09:26:15
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Created: 12/07/08 @ 09:22:10 | Last updated: 12/07/08 @ 20:14:04
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Created: 12/07/08 @ 09:21:29 | Last updated: 12/07/08 @ 11:54:06
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Created: 12/07/08 @ 09:20:04 | Last updated: 12/07/08 @ 20:07:57
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Created: 12/07/08 @ 09:18:36 | Last updated: 12/07/08 @ 11:49:23
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Created: 12/07/08 @ 09:17:40 | Last updated: 12/07/08 @ 20:20:20
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Created: 12/07/08 @ 09:16:00 | Last updated: 12/07/08 @ 11:48:03
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Created: 12/07/08 @ 09:15:13 | Last updated: 12/07/08 @ 20:20:52
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Created: 12/07/08 @ 09:14:19 | Last updated: 12/07/08 @ 20:21:22
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Created: 12/07/08 @ 09:12:44 | Last updated: 12/07/08 @ 11:45:59
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Created: 12/07/08 @ 09:11:08 | Last updated: 12/07/08 @ 20:21:50
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Created: 12/07/08 @ 09:10:15 | Last updated: 12/07/08 @ 11:44:53
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Created: 12/07/08 @ 09:08:24 | Last updated: 12/07/08 @ 11:44:21
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Created: 06/11/07 @ 17:10:16
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Created: 06/11/07 @ 16:59:05 | Last updated: 20/11/07 @ 16:18:31
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Trivial workflow which will initially fail, retry twice then fall over to the alternative specified for the FailingThing process.
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Created: 03/10/07 @ 18:36:28 License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers.
N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.
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Created: 03/10/07 @ 18:36:19 License: Creative Commons Attribution-Share Alike 3.0 Unported License
If you enter http://www.cs.man.ac.uk/~goderisa as input I smile back at you as output.
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