Be User: Antoon Goderis

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Name: Antoon Goderis

Joined: Tuesday 31 July 2007 @ 17:23:00 (GMT)

Last seen: Monday 27 July 2009 @ 09:48:55 (GMT)

Email (public): Not specified

Website: http://www.cs.man.ac.uk/~goderisa

Location: Belgium

Antoon Goderis has been credited 7 times

Antoon Goderis has an average rating of:

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Forget Poirot, how about an infamous Belgian


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Field/Industry: Not specified

Occupation/Role(s): Former member of the myExperiment project

Organisation(s):

University of Manchester

 

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Workflow AffyidToGeneAnnotationnoGOIDandPepstats.xml (v1)

Created: 12/07/08 @ 21:14:58 | Last updated: 12/07/08 @ 21:16:01

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow DDBJ_BLAST.xml (v1)

Created: 12/07/08 @ 10:59:33 | Last updated: 12/07/08 @ 11:00:38

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow blast.xml (v1)

Created: 12/07/08 @ 10:56:39 | Last updated: 12/07/08 @ 10:56:54

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow blast_to_fasta.xml (v1)

Created: 12/07/08 @ 10:55:37 | Last updated: 12/07/08 @ 10:55:52

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow protein2dna.xml (v1)

Created: 12/07/08 @ 10:54:27 | Last updated: 12/07/08 @ 10:54:44

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow linking3.xml (v1)

Created: 12/07/08 @ 10:53:12 | Last updated: 12/07/08 @ 10:53:27

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow links between a specified EMBL accesion number to corresponding identifiers in the MEDLINE database.

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Workflow genomic_sequence.xml (v1)

Created: 12/07/08 @ 10:52:14 | Last updated: 12/07/08 @ 10:52:34

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow linking1.xml (v1)

Created: 12/07/08 @ 10:51:05 | Last updated: 12/07/08 @ 10:51:21

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow interpro_scan_2.xml (v1)

Created: 12/07/08 @ 10:48:08 | Last updated: 12/07/08 @ 10:48:29

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow interpro_scan_3.xml (v1)

Created: 12/07/08 @ 10:44:19 | Last updated: 12/07/08 @ 10:45:22

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow metabolic.xml (v1)

Created: 12/07/08 @ 10:42:42 | Last updated: 12/07/08 @ 10:42:56

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

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Workflow example.xml (v1)

Created: 12/07/08 @ 10:41:23 | Last updated: 12/07/08 @ 10:41:40

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow affy_ids.xml (v1)

Created: 12/07/08 @ 10:40:21 | Last updated: 12/07/08 @ 10:40:43

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow gene_ontology_diagram.xml (v1)

Created: 12/07/08 @ 10:39:09 | Last updated: 12/07/08 @ 10:39:32

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow builds up a subgraph of the Gene Ontology (http://www.geneontology.org) to show the context for a supplied term or terms. It shows this context by colouring all ancestors of the term, all children and all siblings. By default, ancestors of the supplied term or terms are coloured orange, siblings purple and direct children teal. Other terms appear in the default wheat colour.

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Workflow getgenesbyspecies.xml (v1)

Created: 12/07/08 @ 10:37:57 | Last updated: 12/07/08 @ 10:38:21

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow maxdBrowse_strings.xml (v1)

Created: 12/07/08 @ 10:35:17 | Last updated: 12/07/08 @ 10:36:46

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow stringList.xml (v1)

Created: 12/07/08 @ 10:33:04 | Last updated: 12/07/08 @ 10:33:27

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow BlastComparer.xml (v1)

Created: 12/07/08 @ 10:30:46 | Last updated: 12/07/08 @ 10:32:11

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

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Workflow blast_GO.xml (v1)

Created: 12/07/08 @ 10:29:41 | Last updated: 12/07/08 @ 10:29:58

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow gene_by_species.xml (v1)

Created: 12/07/08 @ 10:28:19 | Last updated: 12/07/08 @ 10:28:52

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow protein_protein_interactions.xml (v1)

Created: 12/07/08 @ 10:27:05 | Last updated: 12/07/08 @ 10:27:18

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow database_and_genes.xml (v1)

Created: 12/07/08 @ 10:26:05 | Last updated: 12/07/08 @ 10:26:25

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow probeset_in_qtl.xml (v1)

Created: 12/07/08 @ 10:25:08 | Last updated: 12/07/08 @ 10:25:22

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow genes_from_probesets.xml (v1)

Created: 12/07/08 @ 10:24:11 | Last updated: 12/07/08 @ 10:24:26

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow bind-text.xml (v1)

Created: 12/07/08 @ 10:23:10 | Last updated: 12/07/08 @ 10:23:23

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow bind-idsearch.xml (v1)

Created: 12/07/08 @ 10:22:13 | Last updated: 12/07/08 @ 10:22:29

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow SUB_genes_info_names.xml (v1)

Created: 12/07/08 @ 10:20:46 | Last updated: 12/07/08 @ 10:21:18

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow gene_info_to_gene_name.xml (v1)

Created: 12/07/08 @ 10:19:16 | Last updated: 12/07/08 @ 10:19:48

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow string_complete.xml (v1)

Created: 12/07/08 @ 10:17:40 | Last updated: 12/07/08 @ 10:18:27

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow Ensembl_genes_to_swiss_id.xml (v1)

Created: 12/07/08 @ 10:16:31 | Last updated: 12/07/08 @ 10:16:48

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow ACC_to_GI.xml (v1)

Created: 12/07/08 @ 10:14:43 | Last updated: 12/07/08 @ 10:15:28

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow metabolic_pathway.xml (v1)

Created: 12/07/08 @ 10:13:37 | Last updated: 12/07/08 @ 10:13:50

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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A list of Kegg entires are supplied to the Kegg database which then retrieves the associated metabolic pathways for each entry supplied. e.g. Ids takes in a value of 351, whilst abbr takes in a value of hsa. Thus hsa:351 corresponds to neurodegenerative disorders and alzheimers disease pathways. [fisherp@cs.man.ac.uk]

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Workflow parse_gene_name.xml (v1)

Created: 12/07/08 @ 10:12:36 | Last updated: 12/07/08 @ 10:12:55

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow expression_values.xml (v1)

Created: 12/07/08 @ 10:11:18 | Last updated: 12/07/08 @ 10:11:38

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow swiss_and_name.xml (v1)

Created: 12/07/08 @ 10:10:10 | Last updated: 12/07/08 @ 10:10:34

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow swiss_and_name_seq.xml (v1)

Created: 12/07/08 @ 10:07:42 | Last updated: 12/07/08 @ 10:07:57

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow parse_sequence.xml (v1)

Created: 12/07/08 @ 10:05:17 | Last updated: 12/07/08 @ 10:05:32

Credits: User Paul Fisher

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Workflow interpro_url.xml (v1)

Created: 12/07/08 @ 10:03:35 | Last updated: 12/07/08 @ 20:19:04

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

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Workflow interpro_scan.xml (v1)

Created: 12/07/08 @ 10:02:03 | Last updated: 12/07/08 @ 10:02:17

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow uniprot_search.xml (v1)

Created: 12/07/08 @ 10:00:53 | Last updated: 12/07/08 @ 10:01:18

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow qtl_analysis.xml (v1)

Created: 12/07/08 @ 09:59:53 | Last updated: 12/07/08 @ 10:00:11

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow complete_test.xml (v1)

Created: 12/07/08 @ 09:58:25 | Last updated: 12/07/08 @ 09:58:43

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow remove_duplicates.xml (v1)

Created: 12/07/08 @ 09:56:46 | Last updated: 12/07/08 @ 09:57:40

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow remove_duplicates_full.xml (v1)

Created: 12/07/08 @ 09:55:38 | Last updated: 12/07/08 @ 09:55:52

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow maxdBrowse.xml (v1)

Created: 12/07/08 @ 09:53:37 | Last updated: 12/07/08 @ 09:54:51

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow complete_deleted.xml (v1)

Created: 12/07/08 @ 09:52:27 | Last updated: 12/07/08 @ 09:52:42

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow complete.xml (v1)

Created: 12/07/08 @ 09:51:09 | Last updated: 12/07/08 @ 09:51:36

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow parse_uniprot.xml (v1)

Created: 12/07/08 @ 09:49:45 | Last updated: 12/07/08 @ 09:50:26

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow Ensembl_id_2_Swissport_id.xml (v1)

Created: 12/07/08 @ 09:48:28 | Last updated: 12/07/08 @ 09:48:42

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow lister.xml (v1)

Created: 12/07/08 @ 09:46:59 | Last updated: 12/07/08 @ 09:47:42

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow linking.xml (v1)

Created: 12/07/08 @ 09:45:59 | Last updated: 12/07/08 @ 09:46:13

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow remove_nulls.xml (v1)

Created: 12/07/08 @ 09:45:02 | Last updated: 12/07/08 @ 09:45:21

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow complete_2.xml (v1)

Created: 12/07/08 @ 09:44:05 | Last updated: 12/07/08 @ 09:44:22

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow text_mining.xml (v1)

Created: 12/07/08 @ 09:42:44 | Last updated: 12/07/08 @ 09:43:00

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow Probeset_id_2_Swissport_id.xml (v1)

Created: 12/07/08 @ 09:41:31 | Last updated: 12/07/08 @ 20:19:45

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow maxdBrowse_geneHunt.xml (v1)

Created: 12/07/08 @ 09:40:38 | Last updated: 12/07/08 @ 09:40:52

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow extract_uniprot_embl_gi.xml (v1)

Created: 12/07/08 @ 09:38:57 | Last updated: 12/07/08 @ 09:39:12

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow complete_3.1.xml (v1)

Created: 12/07/08 @ 09:37:32 | Last updated: 12/07/08 @ 09:38:10

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow sub_gene_info_to_uniprot.xml (v1)

Created: 12/07/08 @ 09:36:15 | Last updated: 12/07/08 @ 09:36:33

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow complete_2_text_mining.xml (v1)

Created: 12/07/08 @ 09:33:56 | Last updated: 12/07/08 @ 09:35:15

Credits: User Paul Fisher

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Workflow gene_ontology_analysis.xml (v1)

Created: 12/07/08 @ 09:31:13 | Last updated: 12/07/08 @ 09:32:55

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow gene_ontology_analysis_2.xml (v1)

Created: 12/07/08 @ 09:30:11 | Last updated: 12/07/08 @ 09:30:26

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow parse_uniprot_2.xml (v1)

Created: 12/07/08 @ 09:29:12 | Last updated: 12/07/08 @ 09:29:26

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow ensembl_genes_to_go_terms.xml (v1)

Created: 12/07/08 @ 09:27:59 | Last updated: 12/07/08 @ 09:28:18

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow parse_gene_info.xml (v1)

Created: 12/07/08 @ 09:27:06 | Last updated: 12/07/08 @ 09:27:22

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow ensembl_gene_info.xml (v1)

Created: 12/07/08 @ 09:25:59 | Last updated: 12/07/08 @ 09:26:15

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow geneHunt.xml (v1)

Created: 12/07/08 @ 09:22:10 | Last updated: 12/07/08 @ 20:14:04

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow parse_swiss.xml (v1)

Created: 12/07/08 @ 09:21:29 | Last updated: 12/07/08 @ 11:54:06

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow Gi_to_pathway.xml (v1)

Created: 12/07/08 @ 09:20:04 | Last updated: 12/07/08 @ 20:07:57

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow add_ncbi_to_string.xml (v1)

Created: 12/07/08 @ 09:18:36 | Last updated: 12/07/08 @ 11:49:23

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow blast_simplifier.xml (v1)

Created: 12/07/08 @ 09:17:40 | Last updated: 12/07/08 @ 20:20:20

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow geneId_to_pathway.xml (v1)

Created: 12/07/08 @ 09:16:00 | Last updated: 12/07/08 @ 11:48:03

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow unnested_qtl_pathway_2.xml (v1)

Created: 12/07/08 @ 09:15:13 | Last updated: 12/07/08 @ 20:20:52

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow unnested_qtl_pathway_3.xml (v1)

Created: 12/07/08 @ 09:14:19 | Last updated: 12/07/08 @ 20:21:22

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow unnested_qtl_pathway.xml (v1)

Created: 12/07/08 @ 09:12:44 | Last updated: 12/07/08 @ 11:45:59

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow unnested_qtl_pathway_4.xml (v1)

Created: 12/07/08 @ 09:11:08 | Last updated: 12/07/08 @ 20:21:50

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow qtl_pathway_3.xml (v1)

Created: 12/07/08 @ 09:10:15 | Last updated: 12/07/08 @ 11:44:53

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow maxdBrowse_upreg.xml (v1)

Created: 12/07/08 @ 09:08:24 | Last updated: 12/07/08 @ 11:44:21

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow 3 (v1)

Created: 06/11/07 @ 17:10:16

Credits: User Antoon Goderis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow 1 (v2)

Created: 06/11/07 @ 16:59:05 | Last updated: 20/11/07 @ 16:18:31

Credits: User Antoon Goderis User Carole Goble User A. Random Scientist Network-member try it out

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License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Trivial workflow which will initially fail, retry twice then fall over to the alternative specified for the FailingThing process.

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Workflow BLASTP with simplified results returned (v2)

Created: 03/10/07 @ 18:36:28

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

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Workflow Picture of me (v2)

Created: 03/10/07 @ 18:36:19

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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If you enter http://www.cs.man.ac.uk/~goderisa as input I smile back at you as output.

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