User: Andrew David King

Name: Andrew David King

Joined: Wednesday 10 March 2010 @ 18:35:49 (GMT)

Last seen: Monday 06 February 2012 @ 19:16:48 (GMT)

Email (public): Not specified

Website: http://www.adking.co.uk

Location: Newcastle upon Tyne, United Kingdom

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Taverna 2 Original Uploader Andrew David King	Test for Orthologues (v1) Created: 19/03/10 @ 13:53:54 Credits: Baywatch Solutions License: Creative Commons Attribution-No Derivative Works 3.0 Unported License Warning: The files are hardcoded in to the beanshell of this workflow. Given an orthlog file for an organism from http://www.ebi.ac.uk/integr8/FtpSearch.do? orgProteomeId=22602, find proteins that are orthologous to proteins in another oragnsims, e.g., B.subtils. Outputs percent. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 21 times \| Downloaded: 7 times This Workflow has no tags!	View Download (v1)
Taverna 2 Original Uploader Andrew David King	KEGG Pathway Analysis (v1) Created: 19/03/10 @ 13:46:37 Credits: Baywatch Solutions License: Creative Commons Attribution-No Derivative Works 3.0 Unported License The KEGG pathway analysis of the workflow takes a list of UniProt accession numbers in any of the following formats with the following prefixes: External database Database prefix ----------------- --------------- NCBI GI ncbi-gi: NCBI GeneID ncbi-geneid: GenBank genbank: UniGene unigene: UniProt uniprot: It performs this using the web service bconv, provided by the KEGG database (Kanehisa et a... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 73 times \| Downloaded: 44 times Tags (1): kegg	View Download (v1)
Taverna 2 Original Uploader Andrew David King	Run MGCAT for Global Sequence Comparison (v1) Created: 19/03/10 @ 13:42:38 Credits: Baywatch Solutions License: Creative Commons Attribution-No Derivative Works 3.0 Unported License Runs the M-GCAT tool for Global Sequence Comparison. M-GCAT: http://alggen.lsi.upc.es/recerca/align/mgcat/ intro-mgcat.html Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 16 times \| Downloaded: 15 times Tags (3): comparison \| genome \| mgcat	View Download (v1)
Taverna 2 Original Uploader Andrew David King	Fetch Fasta and Genbank files (v1) Created: 19/03/10 @ 13:32:07 Credits: Baywatch Solutions License: Creative Commons Attribution-No Derivative Works 3.0 Unported License Fetches fasta and genbank files for a given identifier., e.g., CP000256 Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 22 times \| Downloaded: 10 times This Workflow has no tags!	View Download (v1)
Taverna 2 Original Uploader Andrew David King	Fetch EMBL File (v1) Created: 19/03/10 @ 13:23:40 Credits: Baywatch Solutions License: Creative Commons Attribution-No Derivative Works 3.0 Unported License Fetches an EMBL file using the EMBL id. Creates file to a specified location. Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 20 times \| Downloaded: 11 times This Workflow has no tags!	View Download (v1)
Taverna 2 Original Uploader Andrew David King	BlastandParse2 (v1) Created: 19/03/10 @ 12:20:29 Credits: Baywatch Solutions Attributions: fetchEnsemblSeqsAndBlast License: Creative Commons Attribution-No Derivative Works 3.0 Unported License This workflow allows you to configure a BioMart query to fetch sequences you want from Ensembl. These sequences are retrieved and a blast database of them is created (by default, in the directory you ran taverna from). Warning: This workflow assumes that you have blastall and formatdb installed on the machine, and that by default, these are both found or linked in /usr/local/bin. It also assumes that you have write permission to the directory you have run taverna from. The beanshells "creat... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 35 times \| Downloaded: 10 times This Workflow has no tags!	View Download (v1)
Taverna 2 Original Uploader Andrew David King	BlastandParse1 (v1) Created: 19/03/10 @ 12:09:15 Credits: Baywatch Solutions Attributions: fetchEnsemblSeqsAndBlast License: Creative Commons Attribution-No Derivative Works 3.0 Unported License This workflow allows you to configure a BioMart query to fetch sequences you want from Ensembl. These sequences are retrieved and a blast database of them is created (by default, in the directory you ran taverna from). Warning: This workflow assumes that you have blastall and formatdb installed on the machine, and that by default, these are both found or linked in /usr/local/bin. It also assumes that you have write permission to the directory you have run taverna from. The beanshells "creat... Rating: 0.0 / 5 (0 ratings) \| Versions: 1 \| Reviews: 0 \| Comments: 0 \| Citations: 0 Viewed: 40 times \| Downloaded: 12 times This Workflow has no tags!	View Download (v1)