Workflow Entry: Rdfise Riken SciNes Database Repository [myexperiment:scines2rdf]
Created at: 01/02/10 @ 20:10:43
Last updated: 01/02/10 @ 20:13:51
Version 1
(of 1)
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Title:
Rdfise Riken SciNes Database Repository [myexperiment:scines2rdf]
Type:
Taverna 2
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Workflow Components
![header=[] body=[This is the author information extracted from the workflow version] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200] Information](/images/famfamfam_silk/information.png?1202402239)
Authors (1)
![header=[] body=[These are the descriptive titles embedded within the workflow version] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200] Information](/images/famfamfam_silk/information.png?1202402239)
Titles (3)
| scines2rdf |
| Rdfise Riken SciNes Database Repository [myexperiment:scines2rdf] |
| Rdfise Riken SciNes Database Repository [myexperiment:scines_database2rdf] |
![header=[] body=[These are the descriptions embedded within the workflow version] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200] Information](/images/famfamfam_silk/information.png?1202402239)
Descriptions (4)
| This workflow rdfise Riken database available at https://database.riken.jp/sw/links/en/crib151s2i/ |
| This workflow rdfise Riken Hub database available at https://database.riken.jp/sw/links/en/crib151s2i/ |
| This workflow rdfise Riken SciNes Database Repository available at https://database.riken.jp/sw/links/en/crib151s2i/
There is a bug with main page listing databases: version 2p and 3p are similar to 1p. |
| This workflow rdfise Riken SciNes Database Repository available at https://database.riken.jp/sw/links/en/crib151s2i/ |
Processors (14)
| Name |
Type |
Description |
| Riken_databases_url |
stringconstant |
|
| Get_Web_Page_from_URL |
localworker |
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| _1p_2p_3p |
stringconstant |
|
| Concatenate_two_strings |
localworker |
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| Split_string_into_string_list_by_regular_expression |
localworker |
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| parse_riken_html |
beanshell |
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| Split_string_into_string_list_by_regular_expression_2 |
localworker |
|
| String_constant_2 |
stringconstant |
|
| build_rdf_url |
localworker |
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| jena_read_ntriples_from_url |
beanshell |
|
| normalise_uri |
beanshell |
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| Sesame_insert_ntriples |
workflow |
|
| mem_rdf_db |
stringconstant |
|
| _1p |
stringconstant |
|
Beanshells (3)
| Name |
Description |
Inputs |
Outputs |
| parse_riken_html |
|
in
|
namespace
|
| jena_read_ntriples_from_url |
|
rdf_url
|
ntriples
|
| normalise_uri |
|
in
|
out
|
Outputs (3)
| Name |
Description |
| scines_database_ntriples |
|
| rdf_url |
|
| log |
|
Datalinks (15)
| Source |
Sink |
| Concatenate_two_strings:output |
Get_Web_Page_from_URL:url |
| Riken_databases_url:value |
Concatenate_two_strings:string1 |
| Split_string_into_string_list_by_regular_expression:split |
Concatenate_two_strings:string2 |
| _1p:value |
Split_string_into_string_list_by_regular_expression:string |
| Split_string_into_string_list_by_regular_expression_2:split |
parse_riken_html:in |
| Get_Web_Page_from_URL:contents |
Split_string_into_string_list_by_regular_expression_2:string |
| String_constant_2:value |
Split_string_into_string_list_by_regular_expression_2:regex |
| parse_riken_html:namespace |
build_rdf_url:id |
| build_rdf_url:rdf_url |
jena_read_ntriples_from_url:rdf_url |
| jena_read_ntriples_from_url:ntriples |
normalise_uri:in |
| normalise_uri:out |
Sesame_insert_ntriples:triples |
| mem_rdf_db:value |
Sesame_insert_ntriples:repository |
| normalise_uri:out |
scines_database_ntriples |
| build_rdf_url:rdf_url |
rdf_url |
| Sesame_insert_ntriples:sesame_insert_ntriples_log |
log |
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