Workflow Entry: PDB2KEGG step 1done during BH2010
Created at: 13/02/10 @ 09:37:39
Version 1
(of 1)
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Title:
PDB2KEGG step 1done during BH2010
Type:
Taverna 2
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Workflow Components
![header=[] body=[This is the author information extracted from the workflow version] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200] Information](/images/famfamfam_silk/information.png?1202402239)
Authors (1)
| Francois.Belleau@yahoo.ca
mitsuteru.nakao@gmail.com |
![header=[] body=[These are the descriptive titles embedded within the workflow version] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200] Information](/images/famfamfam_silk/information.png?1202402239)
Titles (1)
| PDB2KEGG step 1done during BH2010 |
![header=[] body=[These are the descriptions embedded within the workflow version] cssheader=[boxoverTooltipHeader] cssbody=[boxoverTooltipBody] delay=[200] Information](/images/famfamfam_silk/information.png?1202402239)
Descriptions (0)
Processors (15)
| Name |
Type |
Description |
| String_constant |
stringconstant |
|
| Get_Web_Page_from_URL |
localworker |
|
| Split_string_into_string_list_by_regular_expression |
localworker |
|
| String_constant_2 |
stringconstant |
|
| Filter_list_of_strings_extracting_match_to_a_regex |
localworker |
|
| String_constant_3 |
stringconstant |
|
| String_constant_4 |
stringconstant |
|
| Beanshell |
beanshell |
|
| String_constant_6 |
stringconstant |
|
| Beanshell_2 |
beanshell |
|
| dataflow0 |
workflow |
|
| String_constant_5 |
stringconstant |
|
| String_constant_7 |
stringconstant |
|
| dataflow0_2 |
workflow |
|
| Beanshell_3 |
beanshell |
|
Beanshells (6)
| Name |
Description |
Inputs |
Outputs |
| Beanshell |
|
in0
|
out0
|
| Beanshell_2 |
|
bmuri
sparql_endpoint
|
ntriples
|
| Beanshell_3 |
|
uri
|
ntriples
|
| Concat_log_message |
|
msg
graph
sparql_url
subject
|
log
|
| Split_sparql_url |
|
sparql_url
|
host
port
|
| First_subject |
|
ntriples
|
subject
|
Outputs (7)
| Name |
Description |
| o1 |
|
| o2 |
|
| o3 |
|
| o4 |
|
| o5 |
|
| o6 |
|
| o7 |
|
Datalinks (23)
| Source |
Sink |
| String_constant:value |
Get_Web_Page_from_URL:url |
| Get_Web_Page_from_URL:contents |
Split_string_into_string_list_by_regular_expression:string |
| String_constant_2:value |
Split_string_into_string_list_by_regular_expression:regex |
| Split_string_into_string_list_by_regular_expression:split |
Filter_list_of_strings_extracting_match_to_a_regex:stringlist |
| String_constant_4:value |
Filter_list_of_strings_extracting_match_to_a_regex:regex |
| String_constant_3:value |
Filter_list_of_strings_extracting_match_to_a_regex:group |
| Filter_list_of_strings_extracting_match_to_a_regex:filteredlist |
Beanshell:in0 |
| Beanshell:out0 |
Beanshell_2:bmuri |
| String_constant_6:value |
Beanshell_2:sparql_endpoint |
| Beanshell_2:ntriples |
dataflow0:ntriples |
| String_constant_5:value |
dataflow0:graph |
| String_constant_7:value |
dataflow0:sparql_endpoint_url |
| String_constant_5:value |
dataflow0_2:graph |
| String_constant_7:value |
dataflow0_2:sparql_endpoint_url |
| Beanshell_3:ntriples |
dataflow0_2:ntriples |
| Beanshell:out0 |
Beanshell_3:uri |
| Get_Web_Page_from_URL:contents |
o1 |
| Split_string_into_string_list_by_regular_expression:split |
o2 |
| Filter_list_of_strings_extracting_match_to_a_regex:filteredlist |
o3 |
| Beanshell:out0 |
o4 |
| Beanshell_2:ntriples |
o5 |
| dataflow0:sparql_insert_ntriples_log |
o6 |
| dataflow0_2:sparql_insert_ntriples_log |
o7 |
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