Compare genome, extract proteins which are...
(1)
Takes GI number for source (non-pathogenic) and target (pathogneic) genomes, extracts list of all proteins from each genome using GenBank database. Outputs prtoeins in FastA format. Creates database from source proteins using formatdb (locally installed) and blasts (local installed) proteins from target against this database. Extracts protens which are unique (no blast hits) to the target (pathogenic) genome based on eValue set by user. Takes unique proteins from target and blasts aga...
Created: 2010-03-19
| Last updated: 2010-03-19
Credits:
Ian Laycock
nclteamc
Attributions:
fetchEnsemblSeqsAndBlast
NCBI Gi to Kegg Pathways
color_pathway_by_objects
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