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Angiogenesis Feature Extraction workflow

Workflow Entry: Angiogenesis Feature Extraction workflow

Created at: 23/03/10 @ 13:19:35 Last updated: 10/01/12 @ 08:47:41

Version 3 (latest) (of 3)

Version created on: 03/01/12 @ 10:04:35 by: Charalampos | Revision comments Expand

Last edited on: 10/01/12 @ 08:47:40 by: Charalampos

Title: Angiogenesis Feature Extraction workflow

Type: Taverna 2

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http://www.myexperiment.org/workflows/1193/download?version=3
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Workflow Components

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Inputs (1)

Name	Description
imageFile	Click 'Add File Location' to select an image file to perform image analysis on.

Processors (32)

Name	Type	Description
transformImage_2	wsdl
transformImage_input	xmlsplitter
transformImage_output	xmlsplitter
AdaptiveThreshold	stringconstant
transformImage	wsdl
transformImage_2_input	xmlsplitter
transformImage_2_output	xmlsplitter
ConvertTo8Bit	stringconstant
transformImage_4	wsdl
transformImage_4_input	xmlsplitter
transformImage_4_output	xmlsplitter
Convert2Binary	stringconstant
transformImage_5	wsdl
transformImage_5_input	xmlsplitter
transformImage_5_output	xmlsplitter
skeletonizeImage	stringconstant
getImageURL	wsdl
getImageURL_input	xmlsplitter
getImageURL_output	xmlsplitter
Show_final_Image	beanshell
extractFeatures	wsdl
Angiogenesis_Extraction	stringconstant
extractFeatures_input	xmlsplitter
extractFeatures_output	xmlsplitter
Show_initial_Image	beanshell
getImageURL_2	wsdl
getImageURL_2_input	xmlsplitter
getImageURL_2_output	xmlsplitter
uploadImage	wsdl
uploadImage_input	xmlsplitter
Encode_Byte_Array_to_Base_64	localworker
uploadImage_output	xmlsplitter

Beanshells (2)

Name	Description	Inputs	Outputs
Show_final_Image		url	image
Show_initial_Image		url	image

Outputs (3)

Name	Description
Skeletonized_Image
Image_Features
Initial_Image

Datalinks (35)

Source	Sink
transformImage_input:output	transformImage_2:parameters
ConvertTo8Bit:value	transformImage_input:transformationMethodName
uploadImage_output:return	transformImage_input:imageReference
transformImage_2:parameters	transformImage_output:input
transformImage_2_input:output	transformImage:parameters
AdaptiveThreshold:value	transformImage_2_input:transformationMethodName
transformImage_output:return	transformImage_2_input:imageReference
transformImage:parameters	transformImage_2_output:input
transformImage_4_input:output	transformImage_4:parameters
Convert2Binary:value	transformImage_4_input:transformationMethodName
transformImage_2_output:return	transformImage_4_input:imageReference
transformImage_4:parameters	transformImage_4_output:input
transformImage_5_input:output	transformImage_5:parameters
skeletonizeImage:value	transformImage_5_input:transformationMethodName
transformImage_4_output:return	transformImage_5_input:imageReference
transformImage_5:parameters	transformImage_5_output:input
getImageURL_input:output	getImageURL:parameters
transformImage_5_output:return	getImageURL_input:imageReference
getImageURL:parameters	getImageURL_output:input
getImageURL_output:return	Show_final_Image:url
extractFeatures_input:output	extractFeatures:parameters
Angiogenesis_Extraction:value	extractFeatures_input:extractionMethodName
transformImage_5_output:return	extractFeatures_input:imageReference
extractFeatures:parameters	extractFeatures_output:input
getImageURL_2_output:return	Show_initial_Image:url
getImageURL_2_input:output	getImageURL_2:parameters
uploadImage_output:return	getImageURL_2_input:imageReference
getImageURL_2:parameters	getImageURL_2_output:input
uploadImage_input:output	uploadImage:parameters
Encode_Byte_Array_to_Base_64:base64	uploadImage_input:image
imageFile	Encode_Byte_Array_to_Base_64:bytes
uploadImage:parameters	uploadImage_output:input
Show_final_Image:image	Skeletonized_Image
extractFeatures_output:return	Image_Features
Show_initial_Image:image	Initial_Image

Coordinations (0)

Information Workflow Type

Taverna 2

Information Original Uploader

Charala...

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

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Charalampos

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Information Tags (4)

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Information Statistics

674 viewings

438 downloads

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Citations (0)

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Version History

Earliest Version:
[1] - Angiogenesis Feature Extraction workflow

Created on: Monday 22 March 2010 @ 14:40:41 (GMT)

Created by: Charalampos

Last edited on: Tuesday 23 March 2010 @ 11:13:41 (GMT)

Last edited by: Charalampos

Revision comments:

None

Previous Versions:
[2] - Angiogenesis Feature Extraction workflow

Created on: Tuesday 23 March 2010 @ 13:19:35 (GMT)

Created by: Charalampos

Last edited on: Tuesday 23 March 2010 @ 13:20:43 (GMT)

Last edited by: Charalampos

Revision comments:

This version of the workflow accepts any angiogenic image (in JPG format) from users as input. Credits on myGrid team for helping with the file upload feature.

Latest Version:
[3] - Angiogenesis Feature Extraction workflow

Created on: Tuesday 03 January 2012 @ 10:04:35 (GMT)

Created by: Charalampos

Last edited on: Tuesday 10 January 2012 @ 08:47:40 (GMT)

Last edited by: Charalampos

Revision comments:

Updated Server Endpoint