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Perfrom a text based search through PubMed

Workflow Entry: Perfrom a text based search through PubMed

Created at: 05/07/10 @ 13:03:35 Last updated: 05/07/10 @ 13:03:37

Version 1 (of 1)

Version created on: 05/07/10 @ 13:03:35 by: Paul Fisher | Revision comments Expand

Title: Perfrom a text based search through PubMed

Type: Taverna 2

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Description

This workflow takes in a number of search terms in which to perform a search over the PubMed literature database. These search terms may be input as if entered in the web based version of PubMed. The output from this workflow is a list of PubMed identifiers in xml based format

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Workflow Components

Authors (1)

Titles (1)

Descriptions (1)

Inputs (1)

Name	Description
PubMed_identifiers

Processors (2)

Name	Type	Description
run_eFetch	wsdl	See the Service entry for this web service.
run_eFetch_inpp	xmlsplitter

Beanshells (0)

Outputs (1)

Name	Description
xml_output

Datalinks (3)

Source	Sink
run_eFetch_inpp:output	run_eFetch:inpp
PubMed_identifiers	run_eFetch_inpp:id
run_eFetch:outp	xml_output

Coordinations (0)

Information Workflow Type

Taverna 2

Information Original Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

(People/Groups)

Paul Fisher

Information Attributions (0)

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None

Information Tags (5)

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Information Ratings (0)

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Information Statistics

103 viewings

390 downloads

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Citations (0)

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Version History

Earliest Version:
[1] - Perfrom a text based search through PubMed

Created on: Monday 05 July 2010 @ 13:03:35 (GMT)

Created by: Paul Fisher

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Other workflows that use similar services (5)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Original Uploader

Paul Fisher

Gene to Pubmed (v4)

Created: 08/02/11 @ 13:04:06 | Last updated: 10/02/11 @ 16:01:41

Credits: Paul Fisher

Attributions: Cosine vector space Extract Scientific Terms Rank Phenotype Terms Cosine vector space Rank Phenotype Terms Pathway to Pubmed Extract Scientific Terms

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This workflow takes in a list of gene names and searches the PubMed database for corresponding articles. Any matches to the genes are then retrieved (abstracts only). These abstracts are then returned to the user.

Rating: 0.0 / 5 (0 ratings) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 43 times | Downloaded: 23 times

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