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InviteWorkflow Entry: Cow-Human Ortholog Pathways and Gene annotations for QTL Phenotype
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 Version 2 (latest)
(of 2)
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Version created on:
03/10/07 @ 18:36:00
by:
Paul Fisher
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Revision comments 
Last edited on: 03/12/09 @ 16:16:33 by: Paul Fisher
Title: Cow-Human Ortholog Pathways and Gene annotations for QTL Phenotype
Type: Taverna 1
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Description
This workflow searches for genes which reside in a QTL (Quantitative Trait Loci) region in the cow, Bos taurus. The workflow requires an input of: a chromosome name or number; a QTL start base pair position; QTL end base pair position. Data is then extracted from BioMart to annotate each of the genes found in this region. As the Cow genome is currently unfinished, the workflow subsequently maps the cow ensembl gene ids to human orthologues. Entrez and UniProt identifiers are then identified and sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway database.
Example input:
chromosome_name: 17
start_position: 58127155
end_position: 68127155
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Option 2:
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http://www.myexperiment.org/workflows/14/download?version=2
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Earliest Version:
[1] - Pathways and Gene annotations for QTL Phenotype
Latest Version:
[2] - Cow-Human Ortholog Pathways and Gene annotations for QTL Phenotype
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Original Uploader |
Created: 08/07/09 @ 16:28:34
Credits:
License: Creative Commons Attribution-No Derivative Works 3.0 Unported License
This workflow searches for genes which are found to be differentially expressed in a microarray study using Arabidopsis thaliana. The workflow requires an input of a list of differentially expressed AffyMetrix Probeset identifiers. Data is then extracted from BioMart to annotate each of the genes. The UniProt identifiers are then sent to KEGG to obtain KEGG gene identifiers. The KEGG gene identifiers are then used to searcg for pathways in the KEGG pathway database.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 145 times | Downloaded: 30 times Tags (19): |
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Original Uploader |
Created: 12/07/08 @ 09:15:13 | Last updated: 12/07/08 @ 20:20:52
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 73 times | Downloaded: 37 times Tags (1): |
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Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/14
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Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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Do you have some kind of description and sample input data for this workflow..? :-)